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The map label for this gene is yhfR [C]

Identifier: 226948472

GI number: 226948472

Start: 1423748

End: 1424119

Strand: Direct

Name: yhfR [C]

Synonym: CLM_1359

Alternate gene names: 226948472

Gene position: 1423748-1424119 (Clockwise)

Preceding gene: 226948471

Following gene: 226948473

Centisome position: 34.26

GC content: 29.3

Gene sequence:

>372_bases
ATGAATTTTAATTTTAATGAGGATATTCCTATATATCAGCAAGTAGCTAATGCAATTGAGGATGGAATATTAAAAGGTAT
TTATGAAGAAGAAACCCAAATTCCATCAACAACAGAGATTTCAGTAAATTATAAGATAAATCCAGCTACAGTAGGCAAAG
GATTCAATTTGTTAGTTAGCGAAGAAATAATTTATAAGAAAAGAGGGGTAGGTATGTTTGTTTGTAGTGGTGCAAAGGAA
AAGTTAAAAGAAAAAAGAAAAAACAAATTTTTTGATAGCTACATTTTAAGTCTTGTGGATGAAGCTAAAAGACTAGGAAT
AACTATAGATGAAATAATGGATATGATAAAAGGGGGATATGGCAATGAGTAA

Upstream 100 bases:

>100_bases
AAAATGTAACGGATAATCATAAAACTGTTGACATTTTTAATTGGTAGTTATATAGTTAGTTACATAAGTAACTAACTCAT
TAGGTAGCGAGGTGATAATA

Downstream 100 bases:

>100_bases
TATAGTAATAAAAAATGTTACTAAATCATACCAAAGAAAAGAAGCGTTATCAAATATTTCCATTAACATAGAAGAAGGAA
AAATATATGGTCTTCTTGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Regulatory Protein GntR HTH; Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator GntR Family Protein

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MNFNFNEDIPIYQQVANAIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFNLLVSEEIIYKKRGVGMFVCSGAKE
KLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMIKGGYGNE

Sequences:

>Translated_123_residues
MNFNFNEDIPIYQQVANAIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFNLLVSEEIIYKKRGVGMFVCSGAKE
KLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMIKGGYGNE
>Mature_123_residues
MNFNFNEDIPIYQQVANAIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFNLLVSEEIIYKKRGVGMFVCSGAKE
KLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMIKGGYGNE

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13909; Mature: 13909

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNFNEDIPIYQQVANAIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFNLLVS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEH
EEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMIKGGY
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GNE
CCC
>Mature Secondary Structure
MNFNFNEDIPIYQQVANAIEDGILKGIYEEETQIPSTTEISVNYKINPATVGKGFNLLVS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEH
EEIIYKKRGVGMFVCSGAKEKLKEKRKNKFFDSYILSLVDEAKRLGITIDEIMDMIKGGY
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
GNE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA