Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 226225402

GI number: 226225402

Start: 2909761

End: 2910381

Strand: Reverse

Name: jag [H]

Synonym: Lm4b_02825

Alternate gene names: 226225402

Gene position: 2910381-2909761 (Counterclockwise)

Preceding gene: 226225403

Following gene: 226225401

Centisome position: 99.92

GC content: 35.75

Gene sequence:

>621_bases
GTGAGAGATATAACTGCGCAAGGCTCAAACGTTGAAGAAGCTATCCAAAATGCATTAGCCACTTTAGAAACAACACGCGA
CAAGGTCGAAGTAGAAGTTCTAGATGAAGGTAAAAAAGGTATTTTCGGAATTGGTTCAAGACTGGCTATGGTAAAAGTAA
TTGAAAAAGAAGATGGTATCCAAGTAGCGATTGATTATCTTTTAGATGTTGCTACCAAGATGGGTGCAGTAATCACAATC
GATGTAGAAGAAGTTGGTAAAGATGTGAAGTTGCAAATTAAAGGTGACAGTCTAGGTATGCTAATTGGCAAACACGGTCA
AACCCTTAATGCACTTCAATACTTAACACAATTAATTGCTAATAAAACAACGAGCCAATACAAAAATATTATTGTTAATG
TAGGGGATTATCGTGAAAGACGTCATGAAACGTTAGTAATTTTAGCAAATAAAATGGCAGATAAAGCTCTTAAAACGAAG
CGCGCTGTTCATTTAGAACCAATGCCTTCATTTGAAAGAAAAATTATTCATGCTATTTTAAGCGAGAATGAACAAATTGA
AACGCATTCTGAAGGACGCGATCCTTACCGTTATATTGTGATTAAGCCAGTTCGCAAATAA

Upstream 100 bases:

>100_bases
GCGAACAGGAGGCGCTTGCTGCTGCTCAAGTTGCGGAAGATCGTTTGAAGAAAAAAGCAGCTAACATGAAGGCTTCCAAA
AAAGGAGGTAAGAAAAGAAA

Downstream 100 bases:

>100_bases
ATTCTTAGACTGAGGTTTTAACGAACCTCAGTCTTTTTTTAGGAGGATACTTAAATGGCGATTTATAAGGATTCAGTGCA
TGAAATGTGGGAGAAATACC

Product: Jag protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGIGSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITI
DVEEVGKDVKLQIKGDSLGMLIGKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK

Sequences:

>Translated_206_residues
MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGIGSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITI
DVEEVGKDVKLQIKGDSLGMLIGKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK
>Mature_206_residues
MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGIGSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITI
DVEEVGKDVKLQIKGDSLGMLIGKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23064; Mature: 23064

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS51061 R3H ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGIGSRLAMVKVIEKEDGI
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCHHHHHEEECCCCCH
QVAIDYLLDVATKMGAVITIDVEEVGKDVKLQIKGDSLGMLIGKHGQTLNALQYLTQLIA
HHHHHHHHHHHHHCCCEEEEEHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHH
NKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTKRAVHLEPMPSFERKIIHAIL
CCCHHHHHHEEEECCHHHHHHCCEEEEEEHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
SENEQIETHSEGRDPYRYIVIKPVRK
CCCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGIGSRLAMVKVIEKEDGI
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCHHHHHEEECCCCCH
QVAIDYLLDVATKMGAVITIDVEEVGKDVKLQIKGDSLGMLIGKHGQTLNALQYLTQLIA
HHHHHHHHHHHHHCCCEEEEEHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHH
NKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTKRAVHLEPMPSFERKIIHAIL
CCCHHHHHHEEEECCHHHHHHCCEEEEEEHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
SENEQIETHSEGRDPYRYIVIKPVRK
CCCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]