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The map label for this gene is yerO [H]

Identifier: 226225135

GI number: 226225135

Start: 2638339

End: 2639226

Strand: Reverse

Name: yerO [H]

Synonym: Lm4b_02556

Alternate gene names: 226225135

Gene position: 2639226-2638339 (Counterclockwise)

Preceding gene: 226225136

Following gene: 226225134

Centisome position: 90.61

GC content: 39.53

Gene sequence:

>888_bases
TTGAAGGAGAAGAAGCAGCGGATTATTAAGTCGGCTAAAGAGGTGTTTCAAAAACAAGGGTATTTGAAGACGTCTGTACA
AGATATGGTTGATGCAGCTGGGATTTCTAAAGGGACTTTTTATAATTATTTTACTTCGAAAGAGGAACTGGCAATTGTGA
TTTTTAAGCAGGAGTATTCTGTATTGCATCAGCGTTTGGAGTATACGATGGGGCTAGATGGGACGAAGAAGGATAATTTT
ACGGAGTGCTTGAAAATTATTATTCATTTTTATACGGAAAATGGGGAGATCTTGAATATTACGTTTTCTCAGACGATGAT
TGATGATGATTTTAATGCGTTCTTGCAGAATGTACGACTTAAGAATATGGAATGGGTTAAAAATCAGTTGTTAGAGGTTT
ATGGGAAGGAAACGGAGCCTTATATAAATGATATTACGATGTTGCTTAGCGGGATGGCGGCGATGTATGTCTTTGCTAGT
GGTAGCAAGAATGTTGATTCAGGATTGATTGAGCGGGCTATTCCTTATGTGGTGAGAAGGCTTGATGCACTTGTGAAGGA
TATTTTGGAGAGCGGAGAGATTGTGTTTACGGAAGCGGACACAGAAAATCTGGTGCCGGATCAAACTATGATTAGAAAGA
AAAGACTAGCTAAACTGCGGGGCGCGCTGGAGGAGTTAAATGTCGGGATTGAAAATGCGGATATTGATGACTCGGATAAA
TGGCAGTATAAGGAATCCATGAACGCGCTTGTTGGGGAGATTAACAATAATGAGGCGCCTAGAGATTTCATGGTTCAAGG
AACATTGTTGTATCTTAAACAACATGTACCAGCAAGTTTGACCAAAGAGGTAAATAAATTAGAAGCTTGTGTGAACGGGC
TTTTATAA

Upstream 100 bases:

>100_bases
ATTGTTTAAAAGAATAATGATATTTATTATGGATATCTTGAATAGGTAGTATAAATCGATTATACTATGGGTATAATAAC
AGAACGGGTGGGGTGTTTTT

Downstream 100 bases:

>100_bases
TAATTAGACTGACCAGTCACTTTTTGTTGACTTGTTGGTCTTTTTTTATTATACTTCTATTATTCATCTGGAAATTTCCA
CATGGGAAGGGGTATTAATT

Product: transcription regulator TetR/AcrR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNF
TECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLRGALEELNVGIENADIDDSDK
WQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL

Sequences:

>Translated_295_residues
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNF
TECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLRGALEELNVGIENADIDDSDK
WQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
>Mature_295_residues
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNF
TECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLRGALEELNVGIENADIDDSDK
WQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 33700; Mature: 33700

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYS
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEHHCCCCCCEEEEEEHHHHH
VLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRL
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHCC
KNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFASGSKNVDSGLIERAIPYVVRR
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLRGALEELNVGIENADIDDSDK
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
WQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYS
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEHHCCCCCCEEEEEEHHHHH
VLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRL
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHCC
KNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFASGSKNVDSGLIERAIPYVVRR
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLRGALEELNVGIENADIDDSDK
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
WQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]