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The map label for this gene is nifU [H]

Identifier: 226224960

GI number: 226224960

Start: 2454603

End: 2455046

Strand: Reverse

Name: nifU [H]

Synonym: Lm4b_02381

Alternate gene names: 226224960

Gene position: 2455046-2454603 (Counterclockwise)

Preceding gene: 226224961

Following gene: 226224959

Centisome position: 84.29

GC content: 41.67

Gene sequence:

>444_bases
ATGACAAGCCGGAAATTAGATCAGCTTTATAGACAAGTCATTATGGATCACTATAAAAATCCGCGCAATAATGGAGAGCT
CCCAGATAGCGATGTAACAATCGACCTCAACAACCCAACATGCGGTGATCAAATTCATCTTCATTTAAAAATGGATGGTG
ATAAAATCGTTGCGGCAAAATTCACTGGTAGCGGCTGTTCGATTTCGATGGCCTCTGCTTCGATGATGACGCAAAGCATT
ATTGGGAAAACCGAGAAAGAGGCACTAAAAATGTCACGTGAATTTTCAGAAATGGTGCAAGGTCATGACCATGAAACGAT
TGATGAATACGGCGACGTTGAGGCACTTGCCGGAGTTGCGAAATTCCCAGCAAGAATCAAATGTGCAACCCTTTCTTGGA
AAGCAATGGAGAGAGCGATTTTTGAAAAAGAAGGAACAAAATAA

Upstream 100 bases:

>100_bases
TTTCTTCCACAGCTCGCGCAAGCTTTTATATTTATAATACAAAAGAAGAAATTGATGCGCTTATAGATGGCCTCAAGTTA
ACAAAGGAGTATTTTGGATT

Downstream 100 bases:

>100_bases
GTAGCGAAAAGGAGGATACGACATGACTGAAATTCCAGAAATTGGCGAATACCAATATGGATTCCATGACAAAGATACCT
CTGTGTTCCGTACAGAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSI
IGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK

Sequences:

>Translated_147_residues
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSI
IGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK
>Mature_146_residues
TSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSII
GKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=86, Percent_Identity=39.5348837209302, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17543474, Length=144, Percent_Identity=31.25, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355597, Length=87, Percent_Identity=42.5287356321839, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16384; Mature: 16253

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAK
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCEEEEEE
FTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVA
ECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHH
KFPARIKCATLSWKAMERAIFEKEGTK
HCCCEEEEEECCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAK
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCEEEEEE
FTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVA
ECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHH
KFPARIKCATLSWKAMERAIFEKEGTK
HCCCEEEEEECCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]