Click here to switch to the map view.

The map label for this gene is ytrB [H]

Identifier: 226224848

GI number: 226224848

Start: 2337965

End: 2338843

Strand: Reverse

Name: ytrB [H]

Synonym: Lm4b_02267b

Alternate gene names: 226224848

Gene position: 2338843-2337965 (Counterclockwise)

Preceding gene: 226224849

Following gene: 226224847

Centisome position: 80.3

GC content: 32.88

Gene sequence:

>879_bases
TTGAAGGTTGATTCACTTAGCAAAAAAATTGACGGGGAACTCTTATTGGATAAAATAACATTTGAAGTAAAGCCAGGAGA
AATTATTGGTATAGTCGGACGAAATGGCGTAGGTAAAACAACTCTTTTTCGAACTATTATGGGTTTTTATATTCCTGATG
AGGGAGATGTGTACTTAGATGAGGCATTAAGCAAAAACCCTCAATTAAAGCAAAAATTATTCATGCTTCAAGATAGTTTA
AATTGTTGGGATGGTTATAAGATTCCGACGATAAAAAAATTCTATCAAAAAACTTATCCATTATTCGACGGAGCTAAATT
TGATAACTTACTCAATCAAGTTAACCTAGCTACAGATGTAAAATTTCAAAATTATTCAAAAGGAATGAAAGGTCTTTTTG
GGCTCGTTCTTGCCCTATCTATCGGAGCTGAATTTATTTTGCTCGATGAACCAATGGAAGGTCTCGATATAATTGCTCAA
AAGAAAATTATGGGCATATTATTAGAAGAAGTGGAGAAGCGGAAATTAGGCATTATTATTTCTTCCCATCGTTTAGCTGA
TTTAGATCCGATTGCTGACTATATTCATATTTTACAAGATAATCATATTGAAGAGTCTTACCATCTTGAATCACTTCGGG
AACAAGCTGTTAAAATTCAGATCGCTTTTGAAAATAAAAAAATTCCACCTTTTTTACTGGAAAATGGCAAAGTAATTAAT
AAGTATGGCCGTGTTTACACCATTTTATTCCGAGATATGAACACAGAATTATACGCAGCAATAAAAAAAGAAAAACCAAT
TTTCATGGATGAACTCGCAGTCACATTAGAAGACTTGTTTATTTATCATCTAGAAGAACTAGGAGGCGAGAAATCATGA

Upstream 100 bases:

>100_bases
AAAGAAACGATTCTCGATTTAGTTTACCTTGGAATTAACGTTGAAGAAATACATAGATTATCAGACGAATATAGTCAAGA
CATCATTGGAGGTGACATGG

Downstream 100 bases:

>100_bases
GTGCAGGGCTTCTTTGGAAAGAATGGCGTCAGAATGCGTGGGTATTTATATTTATTTTAATCGCTTTTATAGGTTCTGAA
GCTACGACTGCAACGAACGC

Product: ABC transporter (ATP-binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSL
NCWDGYKIPTIKKFYQKTYPLFDGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
KKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVIN
KYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS

Sequences:

>Translated_292_residues
MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSL
NCWDGYKIPTIKKFYQKTYPLFDGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
KKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVIN
KYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS
>Mature_292_residues
MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSL
NCWDGYKIPTIKKFYQKTYPLFDGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
KKIMGILLEEVEKRKLGIIISSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVIN
KYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI47078218, Length=205, Percent_Identity=25.3658536585366, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262624, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27262626, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=201, Percent_Identity=30.8457711442786, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788472, Length=224, Percent_Identity=24.1071428571429, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081791, Length=321, Percent_Identity=22.7414330218069, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789586, Length=219, Percent_Identity=28.310502283105, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=25.1282051282051, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=212, Percent_Identity=26.8867924528302, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24666092, Length=235, Percent_Identity=28.0851063829787, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221500365, Length=208, Percent_Identity=22.5961538461538, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007184, Length=208, Percent_Identity=22.5961538461538, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33357; Mature: 33357

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDEGDVYLD
CCCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEHH
EALSKNPQLKQKLFMLQDSLNCWDGYKIPTIKKFYQKTYPLFDGAKFDNLLNQVNLATDV
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCHHHCC
KFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQKKIMGILLEEVEKRKLGIII
CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
SSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVIN
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCEEEC
KYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS
CCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFRTIMGFYIPDEGDVYLD
CCCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEHH
EALSKNPQLKQKLFMLQDSLNCWDGYKIPTIKKFYQKTYPLFDGAKFDNLLNQVNLATDV
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCHHHCC
KFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQKKIMGILLEEVEKRKLGIII
CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
SSHRLADLDPIADYIHILQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVIN
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCEEEC
KYGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS
CCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]