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The map label for this gene is ytrA [H]

Identifier: 226224849

GI number: 226224849

Start: 2338833

End: 2339228

Strand: Reverse

Name: ytrA [H]

Synonym: Lm4b_02268

Alternate gene names: 226224849

Gene position: 2339228-2338833 (Counterclockwise)

Preceding gene: 226224850

Following gene: 226224848

Centisome position: 80.31

GC content: 33.84

Gene sequence:

>396_bases
ATGTTTACGATTAACACAAAAAGTCAACTACCGATTTATGAACAGATCGTCCAAAAAATTAAAGAACAAGTTGTCAAAGG
GATACTTCAAGAAGGAGAAAAGATATTATCTATACGTGAATTTGCAAGTAGAATCGGAGTGAACCCAAACACTGTGAGTA
AAGCGTACCAAGAATTAGAACGACAAGAAGTAATTGTCACGGTAAAAGGAAAAGGGACCTTCATAGCGAACCAACAAGAT
AAAGTAAGTTCACCAAAAAAACTAGCAGAAACAAAAATTAAATTAAAAGAAACGATTCTCGATTTAGTTTACCTTGGAAT
TAACGTTGAAGAAATACATAGATTATCAGACGAATATAGTCAAGACATCATTGGAGGTGACATGGTTGAAGGTTGA

Upstream 100 bases:

>100_bases
TCTTTTTAAAAAGAGAATTGATTTATTTTTTTATCTACTGTACTATAGTAACTAGTACAATTAGTTCTCTATAGTAGAAT
TCATGAAAGCAGGGGGAGAG

Downstream 100 bases:

>100_bases
TTCACTTAGCAAAAAAATTGACGGGGAACTCTTATTGGATAAAATAACATTTGAAGTAAAGCCAGGAGAAATTATTGGTA
TAGTCGGACGAAATGGCGTA

Product: transcriptional regulator (GntR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQD
KVSSPKKLAETKIKLKETILDLVYLGINVEEIHRLSDEYSQDIIGGDMVEG

Sequences:

>Translated_131_residues
MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQD
KVSSPKKLAETKIKLKETILDLVYLGINVEEIHRLSDEYSQDIIGGDMVEG
>Mature_131_residues
MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQD
KVSSPKKLAETKIKLKETILDLVYLGINVEEIHRLSDEYSQDIIGGDMVEG

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14791; Mature: 14791

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASRIGVNPNTVSKAYQELE
CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQEVIVTVKGKGTFIANQQDKVSSPKKLAETKIKLKETILDLVYLGINVEEIHRLSDEYS
HHHEEEEECCCCEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QDIIGGDMVEG
HHHCCCCCCCC
>Mature Secondary Structure
MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASRIGVNPNTVSKAYQELE
CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQEVIVTVKGKGTFIANQQDKVSSPKKLAETKIKLKETILDLVYLGINVEEIHRLSDEYS
HHHEEEEECCCCEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QDIIGGDMVEG
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]