Click here to switch to the map view.

The map label for this gene is ycgG [H]

Identifier: 226224518

GI number: 226224518

Start: 1975231

End: 1975914

Strand: Direct

Name: ycgG [H]

Synonym: Lm4b_01931

Alternate gene names: 226224518

Gene position: 1975231-1975914 (Clockwise)

Preceding gene: 226224517

Following gene: 226224519

Centisome position: 67.81

GC content: 36.84

Gene sequence:

>684_bases
ATGAAAAAGCCCACTGTACGTGAGATTATTGATCAAAATCACTTTGATACAATATATGAACCGATTGTTGTTGTAGAAAA
CACACAAATTTTCGGATACGAGTCACTCACCCGCTTAAAAACAGATCACTGGAATGCGATTAGTGATTTTATCGAAGAAG
CGGAACAGGATGGTCTGCAAAAAGCATTTGAGCTGCTCACGCTTCATAACGCAGTGAAACGCTTTAACAAAAGCGGAGAC
ACGCCACTATTTGTCAATATTTCGTATGATACATTTTTAGAAAATCAAGAAGAGTTGCACGATACCCTACTTGATAACGG
GAAAATAGTTTTTGAATTTTTGGAAACATCCAAGTTACCACAAGAACGAATGAACGACTTAGAAAAACAACTGCTTCAAT
TCCAGAAAAAACACGAAACTAAATTTGCTATTGATGATTTTGGCTCCGGTTATGCGGACTTGCATCGCGTTTTTGCGCAC
CATTCTGATTTTGTCAAAACCGATCGCTTATTACTACGAGATTTATTTGAGAGCGATGGCAAAAAAATCTTCTTTGAGCA
ACTTCATAATTATGTTAAAAAGCATCATAAATCCTTAATTGTCGAGGGAGTGGAAACAAAAGAGCAGCTAGAATTCCTTC
AAGAAATCGGCATTCCCTATGCGCAAGGTTATTATTTTCATTAA

Upstream 100 bases:

>100_bases
ATTAGAGAAAATGGACACGTCAAATCCAGAAACAACCCATTTTTTCGATTATATAAATAAAGAAATAACTCTTAAGAAAT
AACGGAAAGAAGTTGGACAA

Downstream 100 bases:

>100_bases
AAATAAAAAAGAAAATCTGCTTATTGTCAGGTTTTCTTTTTGTTTGGAATCAGTTGTTATTCTTCTTTCCCCCATGTAAA
ATAGAATAGAATAAAAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQKAFELLTLHNAVKRFNKSGD
TPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLPQERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAH
HSDFVKTDRLLLRDLFESDGKKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH

Sequences:

>Translated_227_residues
MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQKAFELLTLHNAVKRFNKSGD
TPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLPQERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAH
HSDFVKTDRLLLRDLFESDGKKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH
>Mature_227_residues
MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQKAFELLTLHNAVKRFNKSGD
TPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLPQERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAH
HSDFVKTDRLLLRDLFESDGKKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm (Potential). Note=Found associated with the RNA degradosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=27.4261603375527, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082096, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=23.3050847457627, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081921, Length=234, Percent_Identity=24.3589743589744, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=25.5230125523013, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=24.7933884297521, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 26802; Mature: 26802

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQ
CCCCHHHHHHCCCCCHHHHCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAFELLTLHNAVKRFNKSGDTPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLP
HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCC
QERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAHHSDFVKTDRLLLRDLFESDG
HHHHHHHHHHHHHHHHHHCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHWNAISDFIEEAEQDGLQ
CCCCHHHHHHCCCCCHHHHCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAFELLTLHNAVKRFNKSGDTPLFVNISYDTFLENQEELHDTLLDNGKIVFEFLETSKLP
HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCC
QERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAHHSDFVKTDRLLLRDLFESDG
HHHHHHHHHHHHHHHHHHCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGIPYAQGYYFH
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]