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The map label for this gene is araQ [H]

Identifier: 226224335

GI number: 226224335

Start: 1784326

End: 1785156

Strand: Direct

Name: araQ [H]

Synonym: Lm4b_01746

Alternate gene names: 226224335

Gene position: 1784326-1785156 (Clockwise)

Preceding gene: 226224334

Following gene: 226224338

Centisome position: 61.26

GC content: 37.67

Gene sequence:

>831_bases
ATGAATCAATATAGACAAAAATCGCGCGGCGCTCAAATTGCCGTAATTACAATTTTAACGGTTGGCGGATTCTTTATGAT
TTTACCGTTCATTTGGATGGTTCTCTCCTCTTTGAAAACGGATGCTGAAATTTTAAAAATCCCACCTACTATTTGGCCAG
AAACTTTCACACTAGATAATTTCACCAAACTATTTACTGAAATGGACTTTGCTATTTACTTAAAAAATACGTTAATCATT
GTGTTCTTCTCGTTTTTCGGTTTATTTTTAAATGCGATGGCGGGTTACGGCTTTGCTAAATTTAAATTTAAAGGGAAAAA
CAAGTTATTTTATCTTGTTCTTGCTACAATGATGATTCCAGGACAAGTAACAATGATTCCGGTTTACTTGCTGCTTAATG
CGGCTGGATTAACGAATACGATGACAGGGATTGTGCTTCCAGGACTTGTTGGGGCATTCGGAATTTTCTTATTCCGTCAA
TTTATGTCCACCATATCCGATGATTTACTCGAAGCAGCAAGACTTGATGGCGCTAGTGAATTTTATATTTTCTGGCGGAT
AGTTATCCCTATTTCCCGCCCTGTGCTTGCGGTACAAGGTATTCTTACTTTCATCGCTGGTTGGAACTCGTTCTTATGGC
CGTTAATCATTGCCAACGACGAAAAATTCTACACCCTATCAGTTGGCCTTCAATTATTAAAAGGTCAATATGGCAGCAAC
TACGCCTTACAAATGGCCGGAGCAACCTTCATGGTTATTCCAATTATCTTGATTTTCATGACATTCCAAAAGTACATTTT
AAAAGGCTTCAACGTTTCTGGAATGAAATAA

Upstream 100 bases:

>100_bases
CGTTCATCTTGTTTATCGCGATTATTATTATCACGATTATTCAATTCCGGATTCAGCGCAAAAATAATGATGGGGATATT
TAAGAGAGGAGTGTTTATAA

Downstream 100 bases:

>100_bases
TTAGTCAAAAAAGAGCTTACCCATTTAGGATAAGCTCTTTTTTATTATGGTAAAAATGTTTCACCCATCAAGTAAAAGTC
TACTTCACGAGCTGCTTCTC

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLII
VFFSFFGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSN
YALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK

Sequences:

>Translated_276_residues
MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLII
VFFSFFGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSN
YALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
>Mature_276_residues
MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLII
VFFSFFGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSN
YALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=263, Percent_Identity=28.8973384030418, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787571, Length=258, Percent_Identity=25.5813953488372, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=29.1079812206573, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31103; Mature: 31103

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDN
CCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHH
FTKLFTEMDFAIYLKNTLIIVFFSFFGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCC
GQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASE
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSN
EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEHHHHHHHHHCCCCCC
YALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDN
CCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHH
FTKLFTEMDFAIYLKNTLIIVFFSFFGLFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCC
GQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASE
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSN
EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEHHHHHHHHHCCCCCC
YALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]