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The map label for this gene is ybgI [C]

Identifier: 226224053

GI number: 226224053

Start: 1468285

End: 1469406

Strand: Reverse

Name: ybgI [C]

Synonym: Lm4b_01462

Alternate gene names: 226224053

Gene position: 1469406-1468285 (Counterclockwise)

Preceding gene: 226224054

Following gene: 226224051

Centisome position: 50.45

GC content: 34.76

Gene sequence:

>1122_bases
ATGAAAGTCGCAAATGGCTATGAATACACAGCAATAATGGAAAAAATCGCACCCAAAAAACTTGCAATGGAAGGCGATCC
TATTGGTTTGCAAGTAGGAGATTTATCGAGAAAAGTAAGAAAAATCATGTTTACCTTAGATGTATTGGAAGAAGTTGTTG
ATGAAGCTATTGAGAAAAAAGTTGATTTAATTATTGCTCACCATCCGTTTCTATATCGGCCAACGCAACATATCGATACG
ACAACTAAACAAGGAAAAATGATTAAAAAATTAATCAAACATGATATTACTGTATTTGCCGCACACACAAACCTAGATAT
TGCTCAAGGTGGTGTAAACGATATTTTAGCAGATTTACTCCATTTACAAGAAACAACGATGATTGAGGAAACCTATTCAG
AACCATATTGCAAAATTGCTGTTTATGTTCCAGAGAATGAATTAGAAAGCATTCGTTTAGCTCTTGTAAATAATGGTGCC
GGACAAATAGGGACAGAATATACAGAATGCACATTCCACACGACCGGGATTGGTTCTTTCAAACCAGGAGCAAACGCTAA
CCCAACTATCGGCGAAAAAGAAGCACTGACTTCTGTTCCTGAAGTTAAAATAGAAGCTATATTCCCACAGTATTTAACCG
ATACTATCACTAAAGCAGTTAAAATTGCTCATCCATATGAAGAACCTGCGATTGATGTATATACGCTTGAAATGCAGACT
TATAAAGAAGGATTAGGTCGTGTTGGAATGCTTCCAAAAAAACTCGGCATGGTTTCATTTATTGATAAATTAAAAACTGC
TTTCGCTATTGATAATGTCCGTTTTATTGGGGATTTAAAAACAACAGTCCATAAAGTAGCAATCATTGGTGGCGATGGAA
ATAAATTTATCCATCAAGCAAAAGCCACTGGTGCAGATGTTTTTATTACCGGTGATGTTTATTATCACACGGGACATGAT
TTATTAGCTATTAATCTTCCAACTATTGATGCTGGCCATAATATCGAAAAAGTGATGAAAGGCTATCTTAAAAATAAAAT
GGAAGAACAAGCAAAAATTTTGGATTATGAAGCAGAATTTATTGTATCAGAAGTAAATACAGATCCATTCCAATTTTGTT
GA

Upstream 100 bases:

>100_bases
TTATTCAGACTATTTCTAACAACCAACCAGTTTCAACAGAAAACCAAGCGAAAATTCGTGAATTAGAACATAAAATCGCA
TTAGTAGAGGATGTGCTAAA

Downstream 100 bases:

>100_bases
TAAAAAAACCGAGTAACTCCCTTAAATAAAGGAGTTGCTCGGTTTTTAGCTTCCGCCATTTTTTAAGTGAGCTAGCCGTT
GACGTCTTTTTTCAGCCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDT
TTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITKAVKIAHPYEEPAIDVYTLEMQT
YKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFIGDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHD
LLAINLPTIDAGHNIEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC

Sequences:

>Translated_373_residues
MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDT
TTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITKAVKIAHPYEEPAIDVYTLEMQT
YKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFIGDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHD
LLAINLPTIDAGHNIEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC
>Mature_373_residues
MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDT
TTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITKAVKIAHPYEEPAIDVYTLEMQT
YKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFIGDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHD
LLAINLPTIDAGHNIEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Drosophila melanogaster, GI19921430, Length=139, Percent_Identity=29.4964028776978, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 41447; Mature: 41447

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKK
CCCCCCCHHHHHHHHHCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLIIAHHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLL
EEEEEECCCEEECCCHHCCCCHHHHHHHHHHHHCCEEEEEEECCCEECCCCHHHHHHHHH
HLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGAGQIGTEYTECTFHTTGIGSF
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCC
KPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITKAVKIAHPYEEPAIDVYTLEMQT
CCCCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHH
YKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFIGDLKTTVHKVAIIGGDGNKFIHQA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCEEEEEEEECCCCHHHHHH
KATGADVFITGDVYYHTGHDLLAINLPTIDAGHNIEKVMKGYLKNKMEEQAKILDYEAEF
CCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHE
IVSEVNTDPFQFC
EEEECCCCCCCCC
>Mature Secondary Structure
MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKK
CCCCCCCHHHHHHHHHCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLIIAHHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLL
EEEEEECCCEEECCCHHCCCCHHHHHHHHHHHHCCEEEEEEECCCEECCCCHHHHHHHHH
HLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGAGQIGTEYTECTFHTTGIGSF
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCC
KPGANANPTIGEKEALTSVPEVKIEAIFPQYLTDTITKAVKIAHPYEEPAIDVYTLEMQT
CCCCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHH
YKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFIGDLKTTVHKVAIIGGDGNKFIHQA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCEEEEEEEECCCCHHHHHH
KATGADVFITGDVYYHTGHDLLAINLPTIDAGHNIEKVMKGYLKNKMEEQAKILDYEAEF
CCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHE
IVSEVNTDPFQFC
EEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]