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The map label for this gene is yacO [H]

Identifier: 226222870

GI number: 226222870

Start: 257912

End: 258667

Strand: Direct

Name: yacO [H]

Synonym: Lm4b_00261

Alternate gene names: 226222870

Gene position: 257912-258667 (Clockwise)

Preceding gene: 226222869

Following gene: 226222871

Centisome position: 8.85

GC content: 40.48

Gene sequence:

>756_bases
ATGGAACAAGAAAATGAGCAAGAGTGGATTGGCGGGAGAAATCCTGTTCTTGAAGTATTACGATCTGATAGAGATATCCA
TAAAATATATGTACAAGAAGGTTCACAAAAAGGCGTATTAAAACAAGTCTTAACATTAGCGAAAGAACGGAAAATCCAAG
TTCAATTTGTACCCAAACAAAAAATTGAAAAAGTAGTGAGTGGAGCGCATCAGGGTGTTGCAGCTCAAGTGGCGGCTTAT
CAATATGCGGAGTTAGACGATTTATTCGCTGCTGCTGAAGCGAAAGATGAAATGCCATTTTTCATTATTTTGGATGAATT
AGAAGATCCACACAACTTAGGATCAATTATGCGTACAGCAGATTCTGTTGGAGCACATGGGATTATTATTCCGAAACGTC
GCTCTGTAGGTTTGACGCAAACTGTAGCCAAAGCAAGTACTGGGGCGATGGAATATGTACCAGTGGTTCGCGTGACGAAT
ATGGTACGGACAATGGAAGAACTACAAAAACGCGGGCTTTGGATTTTTGGAACAGATGCGAAAGGTAGTAGCGATTACCG
GACGATGGATGTGGATATGCCGCTTGCTATTGTTATTGGTAGTGAAGGTTTTGGAATGAGCCGCTTAGTACGTGAAAAAT
GTGATTTCCTCGTTCATTTACCAATGCGTGGAAAAGTTACATCACTTAATGCATCTGTTGCAGCTAGTTTGTTACTTTAT
GAAGTTTATCGGAAACGTTTCCCTCTGGAGAAATAA

Upstream 100 bases:

>100_bases
CAGTGCTAGGTTATCTTTACTTAGCTGGTGAGTTGGATCGTTTACAAGAATGGATGGAAAAGGCGCTTGAAATAGTAGAA
AAAGGAGTGGAAACCAACTA

Downstream 100 bases:

>100_bases
AGATGGAACAAATTCTGCTTGTTGACGGATATAATGTGATTGGGGCATGGCCAGAACTTAGTTTCTTAAAAGATCGTGAT
TTGGAAGCGGCAAGAGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAY
QYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY
EVYRKRFPLEK

Sequences:

>Translated_251_residues
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAY
QYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY
EVYRKRFPLEK
>Mature_251_residues
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAY
QYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY
EVYRKRFPLEK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=264, Percent_Identity=28.7878787878788, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=39.4308943089431, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1790083, Length=169, Percent_Identity=30.1775147928994, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788935, Length=178, Percent_Identity=24.1573033707865, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=259, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6324775, Length=285, Percent_Identity=25.9649122807018, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28079; Mature: 28079

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ
CCCCCCHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHH
KIEKVVSGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
DSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDA
HHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
KGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY
CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCEEEECCCCCCEEECHHHHHHHHHHH
EVYRKRFPLEK
HHHHHHCCCCC
>Mature Secondary Structure
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ
CCCCCCHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHH
KIEKVVSGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
DSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDA
HHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
KGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY
CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCEEEECCCCCCEEECHHHHHHHHHHH
EVYRKRFPLEK
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 7510287; 3145906 [H]