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The map label for this gene is mrnC [H]

Identifier: 226222869

GI number: 226222869

Start: 257502

End: 257912

Strand: Direct

Name: mrnC [H]

Synonym: Lm4b_00260

Alternate gene names: 226222869

Gene position: 257502-257912 (Clockwise)

Preceding gene: 226222868

Following gene: 226222870

Centisome position: 8.84

GC content: 41.12

Gene sequence:

>411_bases
ATGGCAGAAGTGAAAGAATACAAACAACTTAATGGCCTCGCGCTTGCTTACATGGGTGACGCAGTTTATGAAAAATTTAT
TCGCGAATATTTACTTGCTGCTGGAAAGACAAAACCGAATCAGTTACACAAAACGGCGACAAAATTCGTTTCTGCAAAAG
GGCAAGCTGTGGCGCTAAAAGCTATGATTGCGGAAGGTTTTTTGACGGAAGAAGAAGATAGAATTGCAAAGCGTGGGCGT
AATGCCAAGTCGTATACAGTGCCTAAAAATACTGACCCTGGAACTTACAGTATGTCCACATCTTTTGAAGCAGTGCTAGG
TTATCTTTACTTAGCTGGTGAGTTGGATCGTTTACAAGAATGGATGGAAAAGGCGCTTGAAATAGTAGAAAAAGGAGTGG
AAACCAACTAA

Upstream 100 bases:

>100_bases
TAATTTTGCACGTGCTGATGAAATTCGAGACATTTTAAAAGAAAAAAATATTATTTTGGAAGACACTGCGCAAGGCACGC
GGTTTAGACGGGGGTAAATC

Downstream 100 bases:

>100_bases
TGGAACAAGAAAATGAGCAAGAGTGGATTGGCGGGAGAAATCCTGTTCTTGAAGTATTACGATCTGATAGAGATATCCAT
AAAATATATGTACAAGAAGG

Product: YazC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGR
NAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN

Sequences:

>Translated_136_residues
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGR
NAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN
>Mature_135_residues
AEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRN
AKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15193; Mature: 15061

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALK
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
AMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQE
HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCHHHHHH
WMEKALEIVEKGVETN
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALK
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
AMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQE
HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCHHHHHH
WMEKALEIVEKGVETN
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]