| Definition | Streptococcus pneumoniae Taiwan19F-14, complete genome. |
|---|---|
| Accession | NC_012469 |
| Length | 2,112,148 |
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The map label for this gene is dinG [H]
Identifier: 225861294
GI number: 225861294
Start: 1330229
End: 1332679
Strand: Reverse
Name: dinG [H]
Synonym: SPT_1397
Alternate gene names: 225861294
Gene position: 1332679-1330229 (Counterclockwise)
Preceding gene: 225861295
Following gene: 225861293
Centisome position: 63.1
GC content: 40.15
Gene sequence:
>2451_bases ATGAAAACGATTGGTAATCGCTATGTTGTGGTGGATTTAGAGGCAACTAGCACAGGTAGTAAGGCTAAAATTATCCAAGT GGGAATTGTCGTGATTGAGGACGGAGAAATCGTCGATCACTATACGACGGATGTCAATCCACATGAACCCTTGGATGCTC ATATCAAAGAACTGACAGGATTGACAGACCAACGTCTGGCGCAAGCACCTGATTTTTCGCAAGTTGCCAGAAAAATATTT GACTTGGTGGAGGATGGGATTTTTGTAGCCCATAATGTTCAGTTTGATGCTAATCTCTTGGCGGAAAATTTATTTTTTGA AGGCTATGAGCTAAGAAACCCTCGTGTTGATACGGTCGAATTGGCCCAGGTCTTTTTCCCTGAACTGGAAAAATATAGCT TGCCGATTTTGTGTCGAGAATTAGGAATTCCTCTTAAACACGCACACACAGCCCTTTCAGATGCCCAAGCTACAGCAGAA TTACTTCTTTTTTTACGGGAAAAGATGACCCAGCTTCCTAAAGGTCTCTTGGAACGCTTGCTGGAAATGGCTGACGCTCT CCTATATGAGTCCTACCTGGTTATTGAGGAAACTTATCGCAACCAATCTATCCTGAGTTCTCCAGACTTGGTCCAAGTTC AAGGTCTGTATTTTAAGAAAACGGCAGCTTCTCTGGAGCCACGAAAACTATCTCAAGACTTTTCTAAAAATATTTCTCTG TTGAACCTTGAAGTGAGGGAGGAACAAGAAAGTTTTGCTAAAGAGGTTGGCTTGCTATTGAAAGATGAACCTGTCTCTCT GATTCAAGCGCCGACAGGGATTGGGAAAACCTATGGCTATCTCTTACCCGCTTTATCTCAATCCAAAGAGCGACAAATTG TTCTTAGTGTTCCGACAAAGATTCTTCAAAATCAAATCATGGAAGAAGAAGGTAAACGCCTCAAGGAAGTGTTCCATACA GATATTCATAGCTTAAAGGGACCACAAAATTATCTGAAGTTGGATGCCTTTTATCATTCCTTGCAGAAAAATGATGAAAA TCGCTTATTTAGACGCTTTAAAATGCAAGTCTTGGTCTGGCTTACTGAGACAGAGACAGGAGATTTGGATGAAATCGGGC AACTCTACCGTTACCAACATTTTCTAGCAGACCTTCGTCATGATGGGAATTTATCATCCCAGAGCTTATTTGTGACGGAA GATTTTTGGAAACGTAGTCAAGAAAGGGCAGAGACTTGCAAGCTTTTAGTGACTAATCATGCCTATCTCGTGACCAGACT TGAAGATAATCCTGAATTTGTCAGTGACCGTTTACTGATTATTGATGAAGTCCAAAAGATTTTGTTAGCTCTAGAAAATC TGCTTCAAGAGACCTACGATATACAATCTATTATCGATTTAATTGATAAGGCTTTAGTAGGAGAAGAAAACAGGGTTCAA CAACGGATACTAGAAAGTATTCGCTTTGAGTGTCTCTACTTGATAGAACAATTTCAGTCTGGTAAATCTAGGAAAAATAT CTTAGATTCTCTGGACAATCTCCATCAGTATTTTTCAGAATTAGAAGTAGAAGGCTTTGATGAGCTGGTTCGCTATTTTA CAGCTGAAGGTGATTACTGGCTTGAAGTAACTGAAACGAGTCAAAAGAAAATTCAGATTTCTTCTACAAAATCATGCCGT ACTCTTCTGTCCTCTTTACTTCCTGAGAGTTGCCAAGTCTTGGGAGTATCGGCTACTCTTGAGATTAGTCAGAGGGTTTC TTTGGCAGACCTTTTAGGCTATCCTGAAGCCAAATTTGTCAAGATTGAATCTCGGGGAAAACAGGAACAAGAAGTGGTTA TGGTCAAAGATTTCCCTCTGGTAACAGAAACCTCCTTAGAAGTCTATGCCAGAGAGGTAGCTGCTTTACTAGTGGAAATT CAAGCTTTCCAGCAACCGATTTTGGTTCTCTTTACCGCTAAAGACATGCTTCTAGCAGTATCGGATTTACTTACAGTTAG CCACTTGGCCCAGTATAAAAATGGGGATGTTCATCAGCTAAAGAAACGCTTTGAAAAAGGTGAACAACAAATCTTGCTTG GTGCAGCAAGTTTCTGGGAGGGAGTTGATTTTTCAAGCCATCCTTTTGTGATTCAAGTTGTACCGAGGCTTCCTTTCCAA AATCCTCAAGAACCCTTGACGAAAAAGATTAATCAAGAACTGAATCAAGAAGGGAAAAATGCCTTTTATGATTATCAATT GCCAATGGCCATTATTCGTTTAAAACAGGCTTTGGGAAGAAGTATGAGACGTGAATACCAACGTTCCTTAACTCTTATTT TGGATAGGAGAATCATCGGAAAACGATACGGCAAACAAATAGTAGCATCTCTAGCAGAAGAAGCAACTGTTAAAACCATC TCTCGATCCGAAGTTGACGAGGCTATTGATAGATTTTTTAATGAACTTTGA
Upstream 100 bases:
>100_bases TATTCGATGGGATTTTTAAGAAAAGTAGTGTTCTTGAGTTTGAAAATTATCCTATGTTTGCAGGTGCCAAATGGCCCTTT TTTTGGTATAATTTTTTATA
Downstream 100 bases:
>100_bases TAAATAGTATTGTATGAAAGTATAAGGTTAGTATATATGAAACGTTCTCTCGACTCTAGAGTCGATTATAGTTTGCTCTT GCCAGTATTTTTTCTACTGG
Product: bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLAQAPDFSQVARKIF DLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAE LLLFLREKMTQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRKLSQDFSKNISL LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKEVFHT DIHSLKGPQNYLKLDAFYHSLQKNDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTE DFWKRSQERAETCKLLVTNHAYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYWLEVTETSQKKIQISSTKSCR TLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFVKIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEI QAFQQPILVLFTAKDMLLAVSDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIGKRYGKQIVASLAEEATVKTI SRSEVDEAIDRFFNEL
Sequences:
>Translated_816_residues MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLAQAPDFSQVARKIF DLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAE LLLFLREKMTQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRKLSQDFSKNISL LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKEVFHT DIHSLKGPQNYLKLDAFYHSLQKNDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTE DFWKRSQERAETCKLLVTNHAYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYWLEVTETSQKKIQISSTKSCR TLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFVKIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEI QAFQQPILVLFTAKDMLLAVSDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIGKRYGKQIVASLAEEATVKTI SRSEVDEAIDRFFNEL >Mature_816_residues MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLAQAPDFSQVARKIF DLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAE LLLFLREKMTQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRKLSQDFSKNISL LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTKILQNQIMEEEGKRLKEVFHT DIHSLKGPQNYLKLDAFYHSLQKNDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTE DFWKRSQERAETCKLLVTNHAYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYWLEVTETSQKKIQISSTKSCR TLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFVKIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEI QAFQQPILVLFTAKDMLLAVSDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIGKRYGKQIVASLAEEATVKTI SRSEVDEAIDRFFNEL
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=197, Percent_Identity=28.9340101522843, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 93507; Mature: 93507
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG CCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHC LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE CCHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCEECCCCCCCHHH LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMTQLPKGLLERL HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRKLSQDFSKNISL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEHHHCCCCHHHHHHHHHCCCEE LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK EEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECHHH ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQKNDENRLFRRFKMQVLVW HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEE LTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEECC AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYW HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE LEVTETSQKKIQISSTKSCRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV EEEECCCCCEEEECCCHHHHHHHHHHCCCHHHEEECEEEEHHHHHHHHHHHHCCCCCEEE KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV EECCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEEHHHHHCCCCCCCCCEEEEEECCCCCC NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIG CCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTIGNRYVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTG CCCCCCEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHC LTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVE CCHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCEECCCCCCCHHH LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKMTQLPKGLLERL HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRKLSQDFSKNISL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEHHHCCCCHHHHHHHHHCCCEE LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQSKERQIVLSVPTK EEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECHHH ILQNQIMEEEGKRLKEVFHTDIHSLKGPQNYLKLDAFYHSLQKNDENRLFRRFKMQVLVW HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEE LTETETGDLDEIGQLYRYQHFLADLRHDGNLSSQSLFVTEDFWKRSQERAETCKLLVTNH EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEECC AYLVTRLEDNPEFVSDRLLIIDEVQKILLALENLLQETYDIQSIIDLIDKALVGEENRVQ EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QRILESIRFECLYLIEQFQSGKSRKNILDSLDNLHQYFSELEVEGFDELVRYFTAEGDYW HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE LEVTETSQKKIQISSTKSCRTLLSSLLPESCQVLGVSATLEISQRVSLADLLGYPEAKFV EEEECCCCCEEEECCCHHHHHHHHHHCCCHHHEEECEEEEHHHHHHHHHHHHCCCCCEEE KIESRGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEIQAFQQPILVLFTAKDMLLAV EECCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH SDLLTVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQ HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEEHHHHHCCCCCCCCCEEEEEECCCCCC NPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIG CCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KRYGKQIVASLAEEATVKTISRSEVDEAIDRFFNEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA