Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 225851973

GI number: 225851973

Start: 457272

End: 458033

Strand: Direct

Name: yqxC [H]

Synonym: BMEA_A0470

Alternate gene names: 225851973

Gene position: 457272-458033 (Clockwise)

Preceding gene: 225851972

Following gene: 225851974

Centisome position: 21.51

GC content: 61.68

Gene sequence:

>762_bases
ATGAACGGCCAGTCCACCGATAACCGTCCGCGCCTTGACCAGCTTTTGGTTGAGCGCGGATTTTTCGCGACACGCTCGCG
CGCCCGTGACGCTATCCAGCGCGGCACGGTGAAGGTGGATGGCAGGCCCATCACCAAGCCCGGCCAGATGGTGGTTCGCG
ACGCCGCACTTGCGGTGGACGATCCGGCAAGCGCCTATGTCTCGCGCGCCGCATTGAAGCTTGTTGCCGCGCTTGACCAT
TTCGACCTCAATGTGAAGGGCCGGACCGCGCTCGATATCGGTGCTTCCACCGGCGGTTTTACGCAAGTGCTGCTGGAGCG
GGGCGCGCATCATGTCATCGCCATCGATGTTGGCCATGACCAGTTGCATGAAAGCTTGCGCCACGATCCGCGCGTGACCA
GCAAGGAGGGTGTCAATGCTCGCGCGCTGGAGCTTGCGCATCTGGACACGCGCGCTGTCGATTGTATTGTGTCGGATGTC
AGCTTCATCTCGCTCAGGCTGGCGCTGCCCCCGGCATTGGCTCTGGCTGAAAAAGGTGCTATCTGCGCGCTTCTCGTCAA
ACCGCTATTCGAGGCGGGACGCGAAGCGATCGGCAAGGGCGGCATCTTGCGCGATCCCGCATATGGCGAGCGCATGGCGC
AAGAACTGAAATCATGGCTGGAAACGCAGCCCGGCTGGCGTGCTCTCGGCCTTTGTCCGTCGCCCATCGAAGGCGGCGAC
GGCAATCGTGAATATCTTCTGGCAGGAAAGAAGGACAGATGA

Upstream 100 bases:

>100_bases
GCCTTGACCGTACGGGCATTGTGCGCACGGTTTTTGCCGCACTTCATCGCGATGAACTGGGCCATGAAGCACTGCCGACA
CCGTTTCGTGCCTGAAACAG

Downstream 100 bases:

>100_bases
CGTCGTCGAAGACGGGGCAAATAACGATCCGCTCGATTGGTGCGGGCGGCGACGGCGTCGCAAACCTTCCCGATGGGCAG
ATCTATGTGCCTTTCACGCT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNGQSTDNRPRLDQLLVERGFFATRSRARDAIQRGTVKVDGRPITKPGQMVVRDAALAVDDPASAYVSRAALKLVAALDH
FDLNVKGRTALDIGASTGGFTQVLLERGAHHVIAIDVGHDQLHESLRHDPRVTSKEGVNARALELAHLDTRAVDCIVSDV
SFISLRLALPPALALAEKGAICALLVKPLFEAGREAIGKGGILRDPAYGERMAQELKSWLETQPGWRALGLCPSPIEGGD
GNREYLLAGKKDR

Sequences:

>Translated_253_residues
MNGQSTDNRPRLDQLLVERGFFATRSRARDAIQRGTVKVDGRPITKPGQMVVRDAALAVDDPASAYVSRAALKLVAALDH
FDLNVKGRTALDIGASTGGFTQVLLERGAHHVIAIDVGHDQLHESLRHDPRVTSKEGVNARALELAHLDTRAVDCIVSDV
SFISLRLALPPALALAEKGAICALLVKPLFEAGREAIGKGGILRDPAYGERMAQELKSWLETQPGWRALGLCPSPIEGGD
GNREYLLAGKKDR
>Mature_253_residues
MNGQSTDNRPRLDQLLVERGFFATRSRARDAIQRGTVKVDGRPITKPGQMVVRDAALAVDDPASAYVSRAALKLVAALDH
FDLNVKGRTALDIGASTGGFTQVLLERGAHHVIAIDVGHDQLHESLRHDPRVTSKEGVNARALELAHLDTRAVDCIVSDV
SFISLRLALPPALALAEKGAICALLVKPLFEAGREAIGKGGILRDPAYGERMAQELKSWLETQPGWRALGLCPSPIEGGD
GNREYLLAGKKDR

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27292; Mature: 27292

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGQSTDNRPRLDQLLVERGFFATRSRARDAIQRGTVKVDGRPITKPGQMVVRDAALAVD
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHCCC
DPASAYVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHHVIAIDVGHD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
QLHESLRHDPRVTSKEGVNARALELAHLDTRAVDCIVSDVSFISLRLALPPALALAEKGA
HHHHHHHCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHEEHHHCCHHHHHHCCCC
ICALLVKPLFEAGREAIGKGGILRDPAYGERMAQELKSWLETQPGWRALGLCPSPIEGGD
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
GNREYLLAGKKDR
CCCEEEEECCCCC
>Mature Secondary Structure
MNGQSTDNRPRLDQLLVERGFFATRSRARDAIQRGTVKVDGRPITKPGQMVVRDAALAVD
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHCCC
DPASAYVSRAALKLVAALDHFDLNVKGRTALDIGASTGGFTQVLLERGAHHVIAIDVGHD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
QLHESLRHDPRVTSKEGVNARALELAHLDTRAVDCIVSDVSFISLRLALPPALALAEKGA
HHHHHHHCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHEEHHHCCHHHHHHCCCC
ICALLVKPLFEAGREAIGKGGILRDPAYGERMAQELKSWLETQPGWRALGLCPSPIEGGD
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
GNREYLLAGKKDR
CCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]