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The map label for this gene is rnhB [H]

Identifier: 225630956

GI number: 225630956

Start: 1366897

End: 1367493

Strand: Direct

Name: rnhB [H]

Synonym: WRi_012780

Alternate gene names: 225630956

Gene position: 1366897-1367493 (Clockwise)

Preceding gene: 225630955

Following gene: 225630960

Centisome position: 94.54

GC content: 36.35

Gene sequence:

>597_bases
ATGAAATACCCAGACTTTACATTAGAAAATAAATTATCAGGAGTGATAGCAGGAGTGGATGAAGTTGGAAGAGGTCCGCT
AGCTGGTCCAGTAATATCCGCAGCCGTAGTGTTTATTGATAGAAATACAATTATTGATGGAATCAACGACTCGAAAAAGT
TGACTCCTCAATGTAGGCAAGTCCTATATGAAAAAATAATATCCGTTGCAAAATTTGGTATAGGAATGGCAAGCGTAGAA
GAAATAAATTCATACAATATCTTGCAAGCAACAAAACTTTCAATGAAACGTGCGTTGATAGACTTGGACCTAGAATTAGA
TTATGTGCTAGTTGATGGTAATCAACCACCTGAAGTGAAATGGCAAGTGAAATCCATAGTAAATGGTGATAATTTGAGTA
CATCAATTGCAGCAGCTTCAATCGTTGCAAAAGTTACGAGAGATCGGCTTATGCAAGAATTGCACAATAAGCATCCTGAA
TATAATTGGTATAAAAATAAAGGATATGGGACAAAAGAGCACCTTAACGCTATTGGCCTTTATGGAATTACAGAACATCA
TAGAAGAAATTTTGCACCCATATCTCGGGCATTATAG

Upstream 100 bases:

>100_bases
TGAAAAGAAGGGATGGTCAGAAAATGTAATCGTTATGAAATTTTGGATAATTTCTATTATCTGTTCAGTTTTTACTATAA
CTTTCTTATTATAAAAACCT

Downstream 100 bases:

>100_bases
CCTTTACCCTTTTTTGAAAGGTATGGTTTCATTAAATAGGCAAACTGTACTCGATCCATTCCTTAAGGTAAACACTGAAC
TTACCCTTTCGATTATCAGG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMASVE
EINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPE
YNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISRAL

Sequences:

>Translated_198_residues
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMASVE
EINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPE
YNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISRAL
>Mature_198_residues
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMASVE
EINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPE
YNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISRAL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=47.5675675675676, Blast_Score=166, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22021; Mature: 22021

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQ
CCCCCCCHHHHHHHHHHCHHHHCCCCCCCHHHHHEEEEEECCCEECCCCCCCCCCHHHHH
VLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVK
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCE
WQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGL
EHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHC
YGITEHHRRNFAPISRAL
CCCCHHHHCCCCHHHHCC
>Mature Secondary Structure
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQ
CCCCCCCHHHHHHHHHHCHHHHCCCCCCCHHHHHEEEEEECCCEECCCCCCCCCCHHHHH
VLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVK
HHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCE
WQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGL
EHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHC
YGITEHHRRNFAPISRAL
CCCCHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA