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The map label for this gene is ybeY [C]

Identifier: 225630499

GI number: 225630499

Start: 812567

End: 813019

Strand: Reverse

Name: ybeY [C]

Synonym: WRi_007500

Alternate gene names: 225630499

Gene position: 813019-812567 (Counterclockwise)

Preceding gene: 225630500

Following gene: 225630498

Centisome position: 56.23

GC content: 31.13

Gene sequence:

>453_bases
ATGTTAGAAGTAAATATTCTTGACAAGAAATGGTGCAGCATTATAGAAAATCCTAAAAATTTTGTATTAGGTGTCATCAA
TGCTTCTCTAAAAGAATTAAAAATAGACCACTATAAACCAAATATATCAATAGCTCTGGCTGATGATGACTTGCTACATC
AACTTAATTTAAAATTTAGAGAAATGGATAAGCCAACTAACGTACTATCATTTCCGTATGAACAATTGTCTAATGAGTGC
GATTTAGGAGACATAGCAATTTCAATAGACACAATAAAAAGAGAATCGCATGAGTATTATATACCCATTCTTGCTCACAT
TGCACACATGTTAGTGCATGGATTACTGCATTTACTTGGTTATGATCACCAAAAAAAAGATGAAGAAATTATAATGAAAA
ATCTAGAAAGAGAGATTTTAGCTTCGCTTGGCTACAATATGTGTGCGATTTAA

Upstream 100 bases:

>100_bases
ATATTCGTACAGTTGTGTACATGACACAAGGGTCTATAACTCTTCTTTTTTGGATTCCAGTGTCAGCTATTTGCATGACA
CCCTTACTGATGTGTCACTC

Downstream 100 bases:

>100_bases
AAGGAATTTAATAAAAATATAGTAGATGATAATAAAATATGTTATCTACAAAGGGTTTTAGCTATAAACAATAAAAGGTA
AGTGATATGGTTCAGTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNEC
DLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYNMCAI

Sequences:

>Translated_150_residues
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNEC
DLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYNMCAI
>Mature_150_residues
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNEC
DLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYNMCAI

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=106, Percent_Identity=48.1132075471698, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_WOLPM (Q73H48)

Other databases:

- EMBL:   AE017196
- RefSeq:   NP_966484.1
- ProteinModelPortal:   Q73H48
- SMR:   Q73H48
- EnsemblBacteria:   EBWOLT00000004174
- GeneID:   2737719
- GenomeReviews:   AE017196_GR
- KEGG:   wol:WD0726
- TIGR:   WD_0726
- GeneTree:   EBGT00050000031392
- HOGENOM:   HBG734136
- OMA:   ELQRNTI
- PhylomeDB:   Q73H48
- ProtClustDB:   CLSK749536
- BioCyc:   WPIP955:WD_0726-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17295; Mature: 17295

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFR
CEEEECCCHHHHHHHCCCHHHEEEHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCHHH
EMDKPTNVLSFPYEQLSNECDLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLG
HCCCCCCCEECCHHHCCCCCCCCCEEEEEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHC
YDHQKKDEEIIMKNLEREILASLGYNMCAI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFR
CEEEECCCHHHHHHHCCCHHHEEEHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCHHH
EMDKPTNVLSFPYEQLSNECDLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLG
HCCCCCCCEECCHHHCCCCCCCCCEEEEEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHC
YDHQKKDEEIIMKNLEREILASLGYNMCAI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA