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The map label for this gene is secD [H]

Identifier: 225630008

GI number: 225630008

Start: 164723

End: 166231

Strand: Direct

Name: secD [H]

Synonym: WRi_001660

Alternate gene names: 225630008

Gene position: 164723-166231 (Clockwise)

Preceding gene: 225630007

Following gene: 225630010

Centisome position: 11.39

GC content: 35.65

Gene sequence:

>1509_bases
ATGTACAACAGACTTATAGTCAAATCTTTTTCAGTATTATGCATCTGTTTATTTGCTTTATACATAACACTGCCAAATTT
CTTTGATAATAAGCTTTTTATTTCGAAAAAAAGAATAAACTTAGGCCTTGACCTGAAAGGAGGGGCATCTTTGCTTTTAA
ACATAGACTTAGACTTCTATTTTAAGGAAAAGCTAAGCATGCTAGCTAACGAAATAAAAGAGACATTGCTAACAAAAAAT
ATTGAATCTAACGTACAAAATAGCGTTATAACTTTAAATAATATTGATGATTATAAAAAAGCATCTGTGTTGATTAATGC
GATAAATCCAAATTTAGAGCTAAATAGAAAAGATTCTTCGATTCTCATTTCGTATAAACCCCATTATAAAAATTCTTTGA
TCAGTGAAGTAGCTGCAGAATCAATAAACAATGTCCAACGCCGTTTGGACAAACTTGGCACAAAGGAAGTCAGCGTTCAA
AAACAAGGGCAAAATAAAATATTAGTGCAGGTGCCTGGAGTAGAAGACACCAAGCAGATAAAATCTCTGCTTGGCAAAAC
TGCTAAGCTAGCTTTTCATTTGGCAAACACTAACATAGCCAAGGTGCAGGATATAGATCACGAAACTACTGTCATGCTCA
AGGATTCTTTAGGTAATTCTTATCCAATATTCCGCAAGACTGAAATAGGTGGCGATTCGCTGGTTAACGCATCAGTTAGA
TTCGGCAATTTAGGTAAACCGACAGTGCATTTTAAATTTGACAGCATAGCGAGTAAAAGATTCGCGAAAATCACTAAAGA
AAATGTAGGAAAACCTTTTGCAATTGTTCTGGATAACACAGTTTTAACAGTACCTACAATACGTGAGCCAATTTTAAATG
GAGAGGGAGAAATTAGCGGTAATTTCACTGAAAAACAAGCAAGCGAACTTGCAATACTTTTAAAATCTGGAGCACTGCCA
GCACCACTTAAAATAATTGAAGAAAAAAACATTGGCCCAAGTCTTGGAGAAGAATCAATAAAGGCAGGGGAAATGGCAGC
AACAATCTCTATTATAGCCGTGGCTTTATTTATAATCATCACTTACGGCAAATTAGGTGTATTGGCCTCTGTTGCACTTT
TTTCTAATGTAGTTCTTATATTATCAATTCTCACTCTGCTTGAAGCAACTCTAACTTTACCTGGAATTGCCGGTATTGCA
CTCACTGTCGGTATGGCGGTGGATGCAAATGTTTTAATATTTGAGCGAATTCGTGAGGAAATCAAATCTGGCAAGAGAGT
GGAACGTGCTATTGAAGAAGGGTTTAAAAACGCTATAAAGACAATACTGGATTCAAATATCACTACATTAATTGCTGCAG
GAATAATGTTCATTATTGGCAGTGGAGCAATAAGAGGCTTTTCTGTCACTCTATCAATAGGAATTTTATGTTCGATGTTT
TCTGCAATCACAGTCACAAAACTCCTGATAGAGTTGTGTATGAACCCGAAGGAACTAGTGCTTTGTTAG

Upstream 100 bases:

>100_bases
AACTTTCTCTCTACTTTTTCTGGGTAAGGTCAAATAGAGAATTTTACAAAAATCTATTTTTAACTTACAATCAATTATTA
CAATTTTAAACCTACAACTT

Downstream 100 bases:

>100_bases
TCAACTACCTTCATTCCCACAACGTTATATCCTGAATCAACGTGCAAAATTTCTCCAGTAGTGCCACTACTTAAGTCGCT
TAATAAGTATAACGCTGCCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MYNRLIVKSFSVLCICLFALYITLPNFFDNKLFISKKRINLGLDLKGGASLLLNIDLDFYFKEKLSMLANEIKETLLTKN
IESNVQNSVITLNNIDDYKKASVLINAINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ
KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNSYPIFRKTEIGGDSLVNASVR
FGNLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALP
APLKIIEEKNIGPSLGEESIKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGIA
LTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMF
SAITVTKLLIELCMNPKELVLC

Sequences:

>Translated_502_residues
MYNRLIVKSFSVLCICLFALYITLPNFFDNKLFISKKRINLGLDLKGGASLLLNIDLDFYFKEKLSMLANEIKETLLTKN
IESNVQNSVITLNNIDDYKKASVLINAINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ
KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNSYPIFRKTEIGGDSLVNASVR
FGNLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALP
APLKIIEEKNIGPSLGEESIKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGIA
LTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMF
SAITVTKLLIELCMNPKELVLC
>Mature_502_residues
MYNRLIVKSFSVLCICLFALYITLPNFFDNKLFISKKRINLGLDLKGGASLLLNIDLDFYFKEKLSMLANEIKETLLTKN
IESNVQNSVITLNNIDDYKKASVLINAINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ
KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNSYPIFRKTEIGGDSLVNASVR
FGNLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALP
APLKIIEEKNIGPSLGEESIKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGIA
LTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMF
SAITVTKLLIELCMNPKELVLC

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=498, Percent_Identity=33.9357429718875, Blast_Score=273, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 54725; Mature: 54725

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNRLIVKSFSVLCICLFALYITLPNFFDNKLFISKKRINLGLDLKGGASLLLNIDLDFY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEECCHHH
FKEKLSMLANEIKETLLTKNIESNVQNSVITLNNIDDYKKASVLINAINPNLELNRKDSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHEEEEEECCCCEEECCCCCE
ILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQKQGQNKILVQVPGVEDTKQI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCHHHH
KSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNSYPIFRKTEIGGDSLVNASVR
HHHHCCHHHEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCEEECEEE
FGNLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISG
ECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCCCCC
NFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEMAATISIIAVALFIII
CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGIALTVGMAVDANVLIFERIREE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMF
HHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
SAITVTKLLIELCMNPKELVLC
HHHHHHHHHHHHHCCCHHEECC
>Mature Secondary Structure
MYNRLIVKSFSVLCICLFALYITLPNFFDNKLFISKKRINLGLDLKGGASLLLNIDLDFY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEECCHHH
FKEKLSMLANEIKETLLTKNIESNVQNSVITLNNIDDYKKASVLINAINPNLELNRKDSS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHEEEEEECCCCEEECCCCCE
ILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQKQGQNKILVQVPGVEDTKQI
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCHHHH
KSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNSYPIFRKTEIGGDSLVNASVR
HHHHCCHHHEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCEEECEEE
FGNLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISG
ECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCCCCC
NFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEMAATISIIAVALFIII
CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGIALTVGMAVDANVLIFERIREE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMF
HHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
SAITVTKLLIELCMNPKELVLC
HHHHHHHHHHHHHCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA