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The map label for this gene is rimM

Identifier: 222525468

GI number: 222525468

Start: 2809057

End: 2809566

Strand: Direct

Name: rimM

Synonym: Chy400_2216

Alternate gene names: 222525468

Gene position: 2809057-2809566 (Clockwise)

Preceding gene: 222525467

Following gene: 222525477

Centisome position: 53.31

GC content: 53.92

Gene sequence:

>510_bases
ATGGACGATCTGCTCTATATTGGTGCTCTTGGTGCGCCTTTTGGTGTGCGTGGTCAGATCAGGCTACATTCTATCTCCAG
TCATCCTGAGCATCTGATTCGCCATCTGCGCACCGTCTTTATCGGGCCGAAACGTGTCCCTCACCAGGTTTCGCGCCTCT
ACATGCACAAACCGGGGCTGCTCATTATTCAATTGCAAACGATCACGGATCGGGATGCAGCGGCTGATTTGCGCGGTGAA
GAAGTCTACATTGCTGCGGCTGATGCCGCCCCACTTGCCGCAGATGAGTTCTTCTATCACGATGTGATCGGTATGCAGGC
AGTTACTGACAGTGGCGAAGATATTGGTGAGGTGCGCGATATTCTCGAAACCGGTGCCGGTGAGATCGTGGTGATTACTC
GTCGCGGACGCCCTGATGCGCTGGTACCGATGGTCCGTGATTTTATTGTGGCAATTGATGTCGGTGAACGGCGCCTGGTG
ATCCGCCCAATTGCCGGTTTACTCGATTGA

Upstream 100 bases:

>100_bases
CCGTCAAAAGAAGCGAGTACACGTCGATATCGAGTAAGTCGGTAGACATCGGCAACCGGTCGGCCATCCGCGCCGATCGG
TTGCTTTGTTGTGGGTTGTT

Downstream 100 bases:

>100_bases
ACCTTACTGGGCAATCGGTAGAATAACTCTAAAGGTTGTCCCCTGCTCAGGCTGTGAACGCACCCATAACTCGCCACCGT
GAAAATCCACGATACTGTAG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGLLIIQLQTITDRDAAADLRGE
EVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLV
IRPIAGLLD

Sequences:

>Translated_169_residues
MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGLLIIQLQTITDRDAAADLRGE
EVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLV
IRPIAGLLD
>Mature_169_residues
MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGLLIIQLQTITDRDAAADLRGE
EVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLV
IRPIAGLLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=149, Percent_Identity=29.5302013422819, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CHLAA (A9WEK5)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001635656.1
- GeneID:   5826510
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_2055
- HOGENOM:   HBG703775
- ProtClustDB:   CLSK973478
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18604; Mature: 18604

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGL
CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCE
LIIQLQTITDRDAAADLRGEEVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRD
EEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHH
ILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD
HHHCCCCCEEEEEECCCCCHHHHHHHHEEEEEECCCCEEEEECHHHHCC
>Mature Secondary Structure
MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGL
CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCE
LIIQLQTITDRDAAADLRGEEVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRD
EEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHH
ILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD
HHHCCCCCEEEEEECCCCCHHHHHHHHEEEEEECCCCEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA