Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 222525434

GI number: 222525434

Start: 2761649

End: 2762572

Strand: Reverse

Name: araQ [H]

Synonym: Chy400_2179

Alternate gene names: 222525434

Gene position: 2762572-2761649 (Counterclockwise)

Preceding gene: 222525435

Following gene: 222525433

Centisome position: 52.43

GC content: 53.35

Gene sequence:

>924_bases
ATGGCAGTAACCACCCGTTCCCAACCCCAGGCCTACGAGCAGACTGTCTTCTTTGACCGGCTGCGCAAATATCTCTTCTT
CGCGATGCTGGCCTTTTGGGCTGCGCTCTCTATTGCACCGCTCTACTTCACGCTGGTCTTCTCTTTCAAGCCGGTCGCTA
ATGCCTACACGCCACCCATCTGGTTGCCGATACCGTTTACGCTGGAAAACTATCAGACCATTCTCGGCACCTTTGAACTT
TTCCCGCGTTGGGTATGGAATAGTGTTTTTATCTCGGTCATCGTCACCGCTTTCCGTGTGCTCTTTTGCGCGATGGCCGG
TTACGCCTTTGCCCGCATTGAATTCCCGCTCAAGAACTTCTGGTTCAATCTGCTCTTGATTTCGATGATGATGCCCGGCG
TGGTCACCCTCATTCCATCATTCCTGATCATTGGGCCGGGCCTGATCCGTGGTGGTCTGGAGCTGGGCGATCTCCGTATT
CCCACTGGCTTCGGTCTGATCGATAATCCGTGGGGTGTGATCCTACCCGGCGTTGCCGATGCATTCGGCGTCTTTATGAT
GACTCAGTTCTACAAATCGTTCCCCAAAGAGCTGGAAGAAGCCGCGATGATGGACGGTTCGGGGCGCTGGGGAACATTCT
TCCGCATCGTATTGCCTATCAGCCAGACTCAGTTGATTACGCTCGCCCTATTGACATTTCAGGGAGCGTGGAATAACTTC
ATGTGGCCGCTGCTGGTCTTGCGCTCGCCAGAGCAATTCACTCTGCCGATTGGCTTGCAGTGGTTCCGCGGCGAATATTA
CACGCTCTACTCGGTCATTCTGGCCGGCTCAATTTTCAACACACTGCCGATCCTGATCATCTTCTTCGTCTTCCAACAAT
ATTTTGTGCGCAGTATCGCTGCCACCGGTTCAAAGGAGGGTTAA

Upstream 100 bases:

>100_bases
GCAGTGATTTTGACCCTGATTATCCTGGCCGTCACCCTCTTGCAGCGCCGGGTGATCGAGGGTAGCGGCAGCGGTGCTGA
ACGTTAGAAAGGTGAGAGCG

Downstream 100 bases:

>100_bases
TCGTCCGCAATCGTCGTTTTGTCACGTCGTACCAACGGGCAGCGCCGGGATGCGCTTGTTTCGCGGAGCTGCCCGCCTTC
TTTTCGCAGTTTATATCACA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAVTTRSQPQAYEQTVFFDRLRKYLFFAMLAFWAALSIAPLYFTLVFSFKPVANAYTPPIWLPIPFTLENYQTILGTFEL
FPRWVWNSVFISVIVTAFRVLFCAMAGYAFARIEFPLKNFWFNLLLISMMMPGVVTLIPSFLIIGPGLIRGGLELGDLRI
PTGFGLIDNPWGVILPGVADAFGVFMMTQFYKSFPKELEEAAMMDGSGRWGTFFRIVLPISQTQLITLALLTFQGAWNNF
MWPLLVLRSPEQFTLPIGLQWFRGEYYTLYSVILAGSIFNTLPILIIFFVFQQYFVRSIAATGSKEG

Sequences:

>Translated_307_residues
MAVTTRSQPQAYEQTVFFDRLRKYLFFAMLAFWAALSIAPLYFTLVFSFKPVANAYTPPIWLPIPFTLENYQTILGTFEL
FPRWVWNSVFISVIVTAFRVLFCAMAGYAFARIEFPLKNFWFNLLLISMMMPGVVTLIPSFLIIGPGLIRGGLELGDLRI
PTGFGLIDNPWGVILPGVADAFGVFMMTQFYKSFPKELEEAAMMDGSGRWGTFFRIVLPISQTQLITLALLTFQGAWNNF
MWPLLVLRSPEQFTLPIGLQWFRGEYYTLYSVILAGSIFNTLPILIIFFVFQQYFVRSIAATGSKEG
>Mature_306_residues
AVTTRSQPQAYEQTVFFDRLRKYLFFAMLAFWAALSIAPLYFTLVFSFKPVANAYTPPIWLPIPFTLENYQTILGTFELF
PRWVWNSVFISVIVTAFRVLFCAMAGYAFARIEFPLKNFWFNLLLISMMMPGVVTLIPSFLIIGPGLIRGGLELGDLRIP
TGFGLIDNPWGVILPGVADAFGVFMMTQFYKSFPKELEEAAMMDGSGRWGTFFRIVLPISQTQLITLALLTFQGAWNNFM
WPLLVLRSPEQFTLPIGLQWFRGEYYTLYSVILAGSIFNTLPILIIFFVFQQYFVRSIAATGSKEG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=282, Percent_Identity=28.0141843971631, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787571, Length=290, Percent_Identity=27.5862068965517, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790464, Length=225, Percent_Identity=30.2222222222222, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35003; Mature: 34872

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTTRSQPQAYEQTVFFDRLRKYLFFAMLAFWAALSIAPLYFTLVFSFKPVANAYTPPI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCE
WLPIPFTLENYQTILGTFELFPRWVWNSVFISVIVTAFRVLFCAMAGYAFARIEFPLKNF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHH
WFNLLLISMMMPGVVTLIPSFLIIGPGLIRGGLELGDLRIPTGFGLIDNPWGVILPGVAD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEECCCCCCCCCCCCCEEECCHHH
AFGVFMMTQFYKSFPKELEEAAMMDGSGRWGTFFRIVLPISQTQLITLALLTFQGAWNNF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCH
MWPLLVLRSPEQFTLPIGLQWFRGEYYTLYSVILAGSIFNTLPILIIFFVFQQYFVRSIA
HHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATGSKEG
HCCCCCC
>Mature Secondary Structure 
AVTTRSQPQAYEQTVFFDRLRKYLFFAMLAFWAALSIAPLYFTLVFSFKPVANAYTPPI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCE
WLPIPFTLENYQTILGTFELFPRWVWNSVFISVIVTAFRVLFCAMAGYAFARIEFPLKNF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHH
WFNLLLISMMMPGVVTLIPSFLIIGPGLIRGGLELGDLRIPTGFGLIDNPWGVILPGVAD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEECCCCCCCCCCCCCEEECCHHH
AFGVFMMTQFYKSFPKELEEAAMMDGSGRWGTFFRIVLPISQTQLITLALLTFQGAWNNF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCH
MWPLLVLRSPEQFTLPIGLQWFRGEYYTLYSVILAGSIFNTLPILIIFFVFQQYFVRSIA
HHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATGSKEG
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]