Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 222524682

GI number: 222524682

Start: 1792394

End: 1793347

Strand: Reverse

Name: xerD [H]

Synonym: Chy400_1409

Alternate gene names: 222524682

Gene position: 1793347-1792394 (Counterclockwise)

Preceding gene: 222524683

Following gene: 222524675

Centisome position: 34.04

GC content: 57.44

Gene sequence:

>954_bases
ATGTCTGAGGCGAACGGAGCCGGTTCACAGCATGCGCGCACCATTATCAGCGAACTCGAACAATTTTTGCACGATTTGAA
GTGCGATGATGGTTTGAGCGACAATACCATCACTTCGTACCGCTGTGATCTGCGGACAGCCGGGCTTGCTCTAAGCCAGG
AGCTGAGTGCTATCACGACGGCTGATATTCAGCAGTTCCTGGCGCGGCGTCAGGAGCAACCGGGTACAACGAACCGACGA
ATTGCCAGTCTGGGTCGGTTTTTTCGCTGGGCATTAGAGCGTGGCTACGTGACGCACAATCCGGTTGAACAGATTGATGG
GCGTTTGCCCACCGAACACCGGCCGCAACCGATTACCAACGAGGCTGAGCTACGCGCACTCGATCAGGCGATTGCGGCAG
CACCACAGCCCTACCGTCTGATCTTTACGATGCTGCGTGAAATTGGTATCCGCACAGACGAGGTTTTGAATCTGAACGTC
GGTGATGTGATTCTTGAACCCGGACGCGAGATGCTCCTGGTTCAGGACAGTAAGAGTGGCAGTAAACGGATGATTGTCTT
GACCCCTGACGCGATGCCGCGCTCGCTCCGCGGATTGCGGGTATGGGTACGTGATATGGAGGATGCTGCTCCGGAGACAC
CGTTGTTCCGCTCCTCACGCGGAACGCGAGTATCGTATGATACCCTGCACCGCCGTTGGGTGGCCGTGTGCAAAGCTGCC
CGCCTGATCGACATTGTCGATGGCCGCGAGCAGCCCCGCTATACTTTGCACCACCTGCGGCATACTGCTGCCGCAGAACT
GATTGCATTCTACCCGGAACAGGTTGTGCGACGTATCCTCGGTCATCGTGATCCACGGTCGACCCGCCGTTACAGTGAGC
TGGTTCGGAGTCGTGCTCATACCGCCGAACGACCGGTTAGCCTCCAGGTGCCATCTCGGCGTGAGGCGATGTAG

Upstream 100 bases:

>100_bases
AGTGTCATTGCTTACGGCGCTGACCGGTGCGCTGTGAGCTACTTGCTGTGCATACCCTGAAGAGAAGTATCTTCATCACA
GCAGGAGAGAGGAGAGTCGT

Downstream 100 bases:

>100_bases
CGCCCCGACCGCGCCCGATGATCGTTCGGATTGATGCGGCGGCGTTCAGGCGCCGCCATTTGTTATCCCAAAAACTGACG
TAAAGCCTGGAAGGTTGGCT

Product: integrase domain-containing protein SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSEANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALSQELSAITTADIQQFLARRQEQPGTTNRR
IASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITNEAELRALDQAIAAAPQPYRLIFTMLREIGIRTDEVLNLNV
GDVILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVAVCKAA
RLIDIVDGREQPRYTLHHLRHTAAAELIAFYPEQVVRRILGHRDPRSTRRYSELVRSRAHTAERPVSLQVPSRREAM

Sequences:

>Translated_317_residues
MSEANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALSQELSAITTADIQQFLARRQEQPGTTNRR
IASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITNEAELRALDQAIAAAPQPYRLIFTMLREIGIRTDEVLNLNV
GDVILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVAVCKAA
RLIDIVDGREQPRYTLHHLRHTAAAELIAFYPEQVVRRILGHRDPRSTRRYSELVRSRAHTAERPVSLQVPSRREAM
>Mature_316_residues
SEANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALSQELSAITTADIQQFLARRQEQPGTTNRRI
ASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITNEAELRALDQAIAAAPQPYRLIFTMLREIGIRTDEVLNLNVG
DVILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVAVCKAAR
LIDIVDGREQPRYTLHHLRHTAAAELIAFYPEQVVRRILGHRDPRSTRRYSELVRSRAHTAERPVSLQVPSRREAM

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=24.8322147651007, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36100; Mature: 35968

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALSQELSAITT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHEECCHHHHHHHHHHHHHHHHH
ADIQQFLARRQEQPGTTNRRIASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITN
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCC
EAELRALDQAIAAAPQPYRLIFTMLREIGIRTDEVLNLNVGDVILEPGREMLLVQDSKSG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHEECCCCEEEEEECCCCC
SKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVAVCKAA
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RLIDIVDGREQPRYTLHHLRHTAAAELIAFYPEQVVRRILGHRDPRSTRRYSELVRSRAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TAERPVSLQVPSRREAM
HHCCCEEEECCCHHCCC
>Mature Secondary Structure 
SEANGAGSQHARTIISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALSQELSAITT
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHEECCHHHHHHHHHHHHHHHHH
ADIQQFLARRQEQPGTTNRRIASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITN
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCC
EAELRALDQAIAAAPQPYRLIFTMLREIGIRTDEVLNLNVGDVILEPGREMLLVQDSKSG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHEECCCCEEEEEECCCCC
SKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVAVCKAA
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RLIDIVDGREQPRYTLHHLRHTAAAELIAFYPEQVVRRILGHRDPRSTRRYSELVRSRAH
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TAERPVSLQVPSRREAM
HHCCCEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]