Click here to switch to the map view.

The map label for this gene is yqfA [H]

Identifier: 222152055

GI number: 222152055

Start: 1947897

End: 1948565

Strand: Direct

Name: yqfA [H]

Synonym: MCCL_1812

Alternate gene names: 222152055

Gene position: 1947897-1948565 (Clockwise)

Preceding gene: 222152053

Following gene: 222152058

Centisome position: 92.65

GC content: 36.02

Gene sequence:

>669_bases
ATGAAGCCTACTGCACCAAAATATAATTTCCATGATATAAAAGAACTAAAATTCGGAGAAGAAATTGGTAACTCTGTATC
TCACGGTGTTCCTGCTCTACTCATCTTATTTGCGCTTCCTTATTTTGCGGTACAGTCATATATTCAGCACGGTAGCCTTT
TTTCTTTCGGTATCAGCGTATTTTTAATCAGCATATTTCTAATGTTTATCTCATCATCTATCTATCACTTAATGCCACCG
AAATCTATTCATAAATTAGTGATGAGAATTATAGATCATGCGATGATCTATATCGCTATCGCGGGTACATATACACCTGT
TGCATTAAGTCTGGTTGGTGGAAAGCTCGGCATCACGATTATGATTACCCAGTGGGTTATTACTATTGCTGGTATCGTCT
ATAAAGCAACAGCGAAACATGTGAATCCAAAAGTAAGTCTTGCCATGTACTTAGTCATGGGCTGGCTTGGTGTTGTATTA
TTTCCATCGTTAATTAATAAAGCAAGTTTGACTTTTATACTGCTTATTATCGCTGGTGGGTTAATGTATACGATAGGTGC
ATGGTTCTACGCACAGAAAAACCGCCATTACTTTCATATGATCTGGCATTTCTTTATAATACTTGGGGCTTTATGTCATT
TCATTGCTTTACTTTATTTTATTCAATAA

Upstream 100 bases:

>100_bases
TATACGAGGTTCATTATTTTATCATTTGCTGGCTAATTTTCGTATCTATCCATTAATAATGATATAATTATCTCATTATT
TAATAAAAAGGATGAATTGT

Downstream 100 bases:

>100_bases
ACAAGCGTGGCACGAGCAAACACTCGTGTCACGCTTGTTATTCTCCAACCAGTAGTCCATTATGTTTATATATTTTAAAC
GTCTGGATTAAAAAATTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKPTAPKYNFHDIKELKFGEEIGNSVSHGVPALLILFALPYFAVQSYIQHGSLFSFGISVFLISIFLMFISSSIYHLMPP
KSIHKLVMRIIDHAMIYIAIAGTYTPVALSLVGGKLGITIMITQWVITIAGIVYKATAKHVNPKVSLAMYLVMGWLGVVL
FPSLINKASLTFILLIIAGGLMYTIGAWFYAQKNRHYFHMIWHFFIILGALCHFIALLYFIQ

Sequences:

>Translated_222_residues
MKPTAPKYNFHDIKELKFGEEIGNSVSHGVPALLILFALPYFAVQSYIQHGSLFSFGISVFLISIFLMFISSSIYHLMPP
KSIHKLVMRIIDHAMIYIAIAGTYTPVALSLVGGKLGITIMITQWVITIAGIVYKATAKHVNPKVSLAMYLVMGWLGVVL
FPSLINKASLTFILLIIAGGLMYTIGAWFYAQKNRHYFHMIWHFFIILGALCHFIALLYFIQ
>Mature_222_residues
MKPTAPKYNFHDIKELKFGEEIGNSVSHGVPALLILFALPYFAVQSYIQHGSLFSFGISVFLISIFLMFISSSIYHLMPP
KSIHKLVMRIIDHAMIYIAIAGTYTPVALSLVGGKLGITIMITQWVITIAGIVYKATAKHVNPKVSLAMYLVMGWLGVVL
FPSLINKASLTFILLIIAGGLMYTIGAWFYAQKNRHYFHMIWHFFIILGALCHFIALLYFIQ

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=35.4368932038835, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71996356, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24947; Mature: 24947

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTAPKYNFHDIKELKFGEEIGNSVSHGVPALLILFALPYFAVQSYIQHGSLFSFGISV
CCCCCCCCCCHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FLISIFLMFISSSIYHLMPPKSIHKLVMRIIDHAMIYIAIAGTYTPVALSLVGGKLGITI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCHHHHHH
MITQWVITIAGIVYKATAKHVNPKVSLAMYLVMGWLGVVLFPSLINKASLTFILLIIAGG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMYTIGAWFYAQKNRHYFHMIWHFFIILGALCHFIALLYFIQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPTAPKYNFHDIKELKFGEEIGNSVSHGVPALLILFALPYFAVQSYIQHGSLFSFGISV
CCCCCCCCCCHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FLISIFLMFISSSIYHLMPPKSIHKLVMRIIDHAMIYIAIAGTYTPVALSLVGGKLGITI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCHHHHHH
MITQWVITIAGIVYKATAKHVNPKVSLAMYLVMGWLGVVLFPSLINKASLTFILLIIAGG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMYTIGAWFYAQKNRHYFHMIWHFFIILGALCHFIALLYFIQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]