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The map label for this gene is yncB [H]

Identifier: 222152053

GI number: 222152053

Start: 1945286

End: 1945903

Strand: Direct

Name: yncB [H]

Synonym: MCCL_1810

Alternate gene names: 222152053

Gene position: 1945286-1945903 (Clockwise)

Preceding gene: 222152049

Following gene: 222152055

Centisome position: 92.53

GC content: 36.08

Gene sequence:

>618_bases
TTGAATTTATTATTATTGTTTCTCACATTAAACTTTTCACCCTTTCAAAGTGATATGCCCATGATACCGGCGACCTTCGA
TCACGCTATTGATGGAGATACAGTTTCATTAAAAATCAATAACCGTAAAAAGACAGTCCGTCTATTACTTATTGATACAC
CTGAATCAAAAAAACCAAATACACCGGTTCAGCCTTATGCTCTTGAAGCAGCCCGTTATACAGAATCGCTTGTAAAGACC
TGTGATCTTAGTGTTCAATATGATACAAAAGGTAAAACTGATCGATACGGCAGAGATTTAGTCTATCTTTACTGTGGTAA
TACAATGATTAATGAACAGCTGGTCAGACAAGGATATGCTCGAGTTGGTTATGTGTATCAACAAAAAGATTATTTAAATC
GTATGTTGGCAGCAGAACGAAAGGCTAAAGCTGAAAGGTTAAAAATATGGTCTCTTAAAGGGTATGTAAACATAGACGGA
GAAGGGTTTAATTCTTCTAAAGAAGAAAGACAGCAAGAGACAGATATTATGCTGAAGATTAGAGAATCACTGCATCGCAT
ACTAGATGCAGCGATTGATGGATTAATCAAAGGAATAAAGTCCGCCTTCACAACATAA

Upstream 100 bases:

>100_bases
AACATAAGGTGATATCTAAAGCACGAATTCATTATATCCATTGATTACGAACGTATGTTTGTTTATAATTAAAAGATATT
GCTAAAAAAGAGGTATTAAA

Downstream 100 bases:

>100_bases
GAAAATATGTTATAATAGAATAGAAAATAATTAAATAACGCATTCTTATACAGAGAGATTGAGGGACAGGCCCAATGACA
TCTCAGCAACCGGTTCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNLLLLFLTLNFSPFQSDMPMIPATFDHAIDGDTVSLKINNRKKTVRLLLIDTPESKKPNTPVQPYALEAARYTESLVKT
CDLSVQYDTKGKTDRYGRDLVYLYCGNTMINEQLVRQGYARVGYVYQQKDYLNRMLAAERKAKAERLKIWSLKGYVNIDG
EGFNSSKEERQQETDIMLKIRESLHRILDAAIDGLIKGIKSAFTT

Sequences:

>Translated_205_residues
MNLLLLFLTLNFSPFQSDMPMIPATFDHAIDGDTVSLKINNRKKTVRLLLIDTPESKKPNTPVQPYALEAARYTESLVKT
CDLSVQYDTKGKTDRYGRDLVYLYCGNTMINEQLVRQGYARVGYVYQQKDYLNRMLAAERKAKAERLKIWSLKGYVNIDG
EGFNSSKEERQQETDIMLKIRESLHRILDAAIDGLIKGIKSAFTT
>Mature_205_residues
MNLLLLFLTLNFSPFQSDMPMIPATFDHAIDGDTVSLKINNRKKTVRLLLIDTPESKKPNTPVQPYALEAARYTESLVKT
CDLSVQYDTKGKTDRYGRDLVYLYCGNTMINEQLVRQGYARVGYVYQQKDYLNRMLAAERKAKAERLKIWSLKGYVNIDG
EGFNSSKEERQQETDIMLKIRESLHRILDAAIDGLIKGIKSAFTT

Specific function: Shows DNase activity on double strand DNA [H]

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 23468; Mature: 23468

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS01123 TNASE_1 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLFLTLNFSPFQSDMPMIPATFDHAIDGDTVSLKINNRKKTVRLLLIDTPESKKPN
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCC
TPVQPYALEAARYTESLVKTCDLSVQYDTKGKTDRYGRDLVYLYCGNTMINEQLVRQGYA
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
RVGYVYQQKDYLNRMLAAERKAKAERLKIWSLKGYVNIDGEGFNSSKEERQQETDIMLKI
HHCEEEHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHH
RESLHRILDAAIDGLIKGIKSAFTT
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLLLLFLTLNFSPFQSDMPMIPATFDHAIDGDTVSLKINNRKKTVRLLLIDTPESKKPN
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCC
TPVQPYALEAARYTESLVKTCDLSVQYDTKGKTDRYGRDLVYLYCGNTMINEQLVRQGYA
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
RVGYVYQQKDYLNRMLAAERKAKAERLKIWSLKGYVNIDGEGFNSSKEERQQETDIMLKI
HHCEEEHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHH
RESLHRILDAAIDGLIKGIKSAFTT
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]