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The map label for this gene is nrdD [H]

Identifier: 222152058

GI number: 222152058

Start: 1951406

End: 1953253

Strand: Direct

Name: nrdD [H]

Synonym: MCCL_1815

Alternate gene names: 222152058

Gene position: 1951406-1953253 (Clockwise)

Preceding gene: 222152055

Following gene: 222152059

Centisome position: 92.82

GC content: 39.34

Gene sequence:

>1848_bases
ATGAGTAAAGTCATAGAACATTTACAAGAAGATCTTTCACGTTTAACAGATGAAGAGAGTGACGTAATCCATGAGAATGC
AAATAAAGATCCAAAGCGTTTTACTACGATGCGAGATTTAACTGCCGGGACTGTCGCACGTCATATTGGATTAAGCATGT
TACCTGAGCATGTCAAGGAGGCTCACGTTAAAGGAGAAATCCACTTTCATGATCTAGATTACCATCCTTACCAACCTATG
ACAAATTGTTGTTTAATAGATATCGACCACATGTTACAGAACGGCTTCGTTATAGGAAATGCACATGTTAATCCACCACA
ATCTATTCAAACCGCTGCAGCACAGATCAGTCAGATCATTGCAAATGTAAGTAGTAGCCAGTATGGTGGCTGTTCTATAG
ATCGTATCGATCAAGTATTGAGCAAATTCGCTCAGCTTAACGCATTAAATCACAAACGTAACGCTGAGCAATTCGTTACG
CTGCATTTGCAGGATGACTACGTTAAGAGAATGACAGAAAAAGATATATATGATGCAATGCAGTCATTAGAATATGAAAT
CAACACTTTATATACGAGCAATGGGCAGACTCCATTTGTAACATTTGGTTTTGGACTTGGTACAGATGTTTATGCGAGAA
TGATTCAGCACGCAATTCTAAGTAATAGACTAGCAGGTTTAGGTAAAGAAAAGGTTACTGCAATATTCCCTAAACTTGTC
TTCAGTATTAAAGACGGAGTTAATTTCAAAGCAGGGGATCCAAATTACGATATTAAACAGCTTGCATTACAATGTTCTTC
TAAAAGAATGTATCCAGACATATTGAATTACAAAGCTCTTACCGATCTCATCGGTGACTTCAAAGTACCAATGGGCTGCC
GCAGTTTCTTAAATCTATACGAAGAAGATGGGAAGGCTGTTAATAGCGGTCGTTGCAATTTGGGTGTTGTAACGTTGAAT
CTTCCTAGAATCGCCCTCGAGTCAAAAGATACAGAGCAGTTCTTATCAATATTAAGAACCCGATTAGATATCATAAAAGA
AGCTTGTTTATATCGTATCCATCGCCTTAAAGATGCTACCACTGAAAATGCACCGATACTTTATCTACACGGTGCATTCG
GTAAATCACTGCGTCCAGACGATGATGTTATACAACTGTTCACCCACAGACGAGCAACTATAAGTATCGGCTATATCGGA
CTGTATGAAGTCGGTGCAGCTTTATTCCACCCGAACTGGGAAACTGATGAGAAAGCTAAATCCTTCGTGGAGCAAGTATT
AATCACGATGAAACAGTATGCAGAACAATTAACGGAACAGTATGATGTACAATTCAGTATATATGGTACACCAAGTGAAT
CACTCACACACCGCTTCTGCACTTTAGATTACGAGAAGTTTGGTACGATAGAGCATATTACGGATAAAGGCTATTATACG
AACTCCTTTCACTACGACACGAGAAAGACAGTTACTCCATTTGAGAAACTGTCATTTGAACAACGCTTTGCAAAACATTC
GTTAGGTGGCTTTATACATTACTGTGAATACCCTGATTTGAAGCATAACTTAAAAGCGCTCGAAGCAGTATGGGATTATT
CCTATGATAAAGTCGGTTACTTAGGAACGAACTTACCGATTGATAAATGTTTTGAGTGTGGATTTGAAGGAGAATTCGAA
GCGACTGCAGATGGCTTTATGTGTCCGCACTGCCATAATACTGATCCCGAAACGACCGATGTGATTAAGCGCACTTGCGG
TTATTTAGGTCAACCGCTGAAACGACCGATGATTAAAGGGCGCCATAAGGAAATACAATCTCGAGTTAAACATATGCGTT
CAGTATGA

Upstream 100 bases:

>100_bases
ACGAATTATTGTAGTAATTGTGAATATCGAAACACACACCTTATATAGTGTTAACATATTAATCAAATACTATATATAGC
GATAAGGAGTACGAATATGA

Downstream 100 bases:

>100_bases
GTAATATCGCAAAGATTATGCCAGCATCAATGGTTGACGGTGAAGGCGTTCGTGTCAGCGTATATATTTCAGGGTGCAGC
TTTCACTGTTCAGGTTGTTA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 614

Protein sequence:

>615_residues
MSKVIEHLQEDLSRLTDEESDVIHENANKDPKRFTTMRDLTAGTVARHIGLSMLPEHVKEAHVKGEIHFHDLDYHPYQPM
TNCCLIDIDHMLQNGFVIGNAHVNPPQSIQTAAAQISQIIANVSSSQYGGCSIDRIDQVLSKFAQLNALNHKRNAEQFVT
LHLQDDYVKRMTEKDIYDAMQSLEYEINTLYTSNGQTPFVTFGFGLGTDVYARMIQHAILSNRLAGLGKEKVTAIFPKLV
FSIKDGVNFKAGDPNYDIKQLALQCSSKRMYPDILNYKALTDLIGDFKVPMGCRSFLNLYEEDGKAVNSGRCNLGVVTLN
LPRIALESKDTEQFLSILRTRLDIIKEACLYRIHRLKDATTENAPILYLHGAFGKSLRPDDDVIQLFTHRRATISIGYIG
LYEVGAALFHPNWETDEKAKSFVEQVLITMKQYAEQLTEQYDVQFSIYGTPSESLTHRFCTLDYEKFGTIEHITDKGYYT
NSFHYDTRKTVTPFEKLSFEQRFAKHSLGGFIHYCEYPDLKHNLKALEAVWDYSYDKVGYLGTNLPIDKCFECGFEGEFE
ATADGFMCPHCHNTDPETTDVIKRTCGYLGQPLKRPMIKGRHKEIQSRVKHMRSV

Sequences:

>Translated_615_residues
MSKVIEHLQEDLSRLTDEESDVIHENANKDPKRFTTMRDLTAGTVARHIGLSMLPEHVKEAHVKGEIHFHDLDYHPYQPM
TNCCLIDIDHMLQNGFVIGNAHVNPPQSIQTAAAQISQIIANVSSSQYGGCSIDRIDQVLSKFAQLNALNHKRNAEQFVT
LHLQDDYVKRMTEKDIYDAMQSLEYEINTLYTSNGQTPFVTFGFGLGTDVYARMIQHAILSNRLAGLGKEKVTAIFPKLV
FSIKDGVNFKAGDPNYDIKQLALQCSSKRMYPDILNYKALTDLIGDFKVPMGCRSFLNLYEEDGKAVNSGRCNLGVVTLN
LPRIALESKDTEQFLSILRTRLDIIKEACLYRIHRLKDATTENAPILYLHGAFGKSLRPDDDVIQLFTHRRATISIGYIG
LYEVGAALFHPNWETDEKAKSFVEQVLITMKQYAEQLTEQYDVQFSIYGTPSESLTHRFCTLDYEKFGTIEHITDKGYYT
NSFHYDTRKTVTPFEKLSFEQRFAKHSLGGFIHYCEYPDLKHNLKALEAVWDYSYDKVGYLGTNLPIDKCFECGFEGEFE
ATADGFMCPHCHNTDPETTDVIKRTCGYLGQPLKRPMIKGRHKEIQSRVKHMRSV
>Mature_614_residues
SKVIEHLQEDLSRLTDEESDVIHENANKDPKRFTTMRDLTAGTVARHIGLSMLPEHVKEAHVKGEIHFHDLDYHPYQPMT
NCCLIDIDHMLQNGFVIGNAHVNPPQSIQTAAAQISQIIANVSSSQYGGCSIDRIDQVLSKFAQLNALNHKRNAEQFVTL
HLQDDYVKRMTEKDIYDAMQSLEYEINTLYTSNGQTPFVTFGFGLGTDVYARMIQHAILSNRLAGLGKEKVTAIFPKLVF
SIKDGVNFKAGDPNYDIKQLALQCSSKRMYPDILNYKALTDLIGDFKVPMGCRSFLNLYEEDGKAVNSGRCNLGVVTLNL
PRIALESKDTEQFLSILRTRLDIIKEACLYRIHRLKDATTENAPILYLHGAFGKSLRPDDDVIQLFTHRRATISIGYIGL
YEVGAALFHPNWETDEKAKSFVEQVLITMKQYAEQLTEQYDVQFSIYGTPSESLTHRFCTLDYEKFGTIEHITDKGYYTN
SFHYDTRKTVTPFEKLSFEQRFAKHSLGGFIHYCEYPDLKHNLKALEAVWDYSYDKVGYLGTNLPIDKCFECGFEGEFEA
TADGFMCPHCHNTDPETTDVIKRTCGYLGQPLKRPMIKGRHKEIQSRVKHMRSV

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=614, Percent_Identity=52.1172638436482, Blast_Score=652, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 70103; Mature: 69971

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVIEHLQEDLSRLTDEESDVIHENANKDPKRFTTMRDLTAGTVARHIGLSMLPEHVKE
CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHVKGEIHFHDLDYHPYQPMTNCCLIDIDHMLQNGFVIGNAHVNPPQSIQTAAAQISQII
HHHCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHH
ANVSSSQYGGCSIDRIDQVLSKFAQLNALNHKRNAEQFVTLHLQDDYVKRMTEKDIYDAM
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
QSLEYEINTLYTSNGQTPFVTFGFGLGTDVYARMIQHAILSNRLAGLGKEKVTAIFPKLV
HHHHEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
FSIKDGVNFKAGDPNYDIKQLALQCSSKRMYPDILNYKALTDLIGDFKVPMGCRSFLNLY
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EEDGKAVNSGRCNLGVVTLNLPRIALESKDTEQFLSILRTRLDIIKEACLYRIHRLKDAT
HHCCCEECCCCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TENAPILYLHGAFGKSLRPDDDVIQLFTHRRATISIGYIGLYEVGAALFHPNWETDEKAK
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHH
SFVEQVLITMKQYAEQLTEQYDVQFSIYGTPSESLTHRFCTLDYEKFGTIEHITDKGYYT
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCHHHCCCHHHCCCCCEEE
NSFHYDTRKTVTPFEKLSFEQRFAKHSLGGFIHYCEYPDLKHNLKALEAVWDYSYDKVGY
CCEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
LGTNLPIDKCFECGFEGEFEATADGFMCPHCHNTDPETTDVIKRTCGYLGQPLKRPMIKG
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCC
RHKEIQSRVKHMRSV
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKVIEHLQEDLSRLTDEESDVIHENANKDPKRFTTMRDLTAGTVARHIGLSMLPEHVKE
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHVKGEIHFHDLDYHPYQPMTNCCLIDIDHMLQNGFVIGNAHVNPPQSIQTAAAQISQII
HHHCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHH
ANVSSSQYGGCSIDRIDQVLSKFAQLNALNHKRNAEQFVTLHLQDDYVKRMTEKDIYDAM
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
QSLEYEINTLYTSNGQTPFVTFGFGLGTDVYARMIQHAILSNRLAGLGKEKVTAIFPKLV
HHHHEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
FSIKDGVNFKAGDPNYDIKQLALQCSSKRMYPDILNYKALTDLIGDFKVPMGCRSFLNLY
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EEDGKAVNSGRCNLGVVTLNLPRIALESKDTEQFLSILRTRLDIIKEACLYRIHRLKDAT
HHCCCEECCCCCEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TENAPILYLHGAFGKSLRPDDDVIQLFTHRRATISIGYIGLYEVGAALFHPNWETDEKAK
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHH
SFVEQVLITMKQYAEQLTEQYDVQFSIYGTPSESLTHRFCTLDYEKFGTIEHITDKGYYT
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCHHHCCCHHHCCCCCEEE
NSFHYDTRKTVTPFEKLSFEQRFAKHSLGGFIHYCEYPDLKHNLKALEAVWDYSYDKVGY
CCEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
LGTNLPIDKCFECGFEGEFEATADGFMCPHCHNTDPETTDVIKRTCGYLGQPLKRPMIKG
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCC
RHKEIQSRVKHMRSV
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]