Definition Macrococcus caseolyticus JCSC5402, complete genome.
Accession NC_011999
Length 2,102,324

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The map label for this gene is yfiH [C]

Identifier: 222151009

GI number: 222151009

Start: 818820

End: 819749

Strand: Direct

Name: yfiH [C]

Synonym: MCCL_0759

Alternate gene names: 222151009

Gene position: 818820-819749 (Clockwise)

Preceding gene: 222151008

Following gene: 222151010

Centisome position: 38.95

GC content: 39.14

Gene sequence:

>930_bases
ATGTACCAAGCTTTATCCGTGATCGTGGTTCAAGAACACGTCGATCAAGAAGATAATGAAAGCTTTAATATTAGGAGTGG
ACCATTCTCATGTTCCACTCCTTTTTCAATATTGGGGGTCGTTATGGATATATTTAAAAGAAAAGCTGTTACGTTTAACT
ATAAGGATGATGAACATATAATTGGTATTACAGGACGCAATGGTGGTGTCAGTGACTATCCAGAGCTTTCTTTGAATATG
GCAAGATATATAGAAGATGCACCAGAAAATGTATCTCGCAATCAACAGCGTGTTGCTCAAGAAATCAATTTTGATACTTC
AAAGTGGATATTTCCAATTCAAAAGCATGGAAATCATATTAAAGAAGTTTCATTAGAAGACAGAGGGATAAATATTACTG
AATTGACCACGGCCCTGGACGATGTGGATGGCCTCTATACATATGATAGAGAAGTATTATTGACCATGTGTTTTGCAGAT
TGTGTACCCATCTATATCTATAGTGCGACCGATAACTTTATCGCGCTTGGACATGCGGGTTGGCGTGGTACTGTAGGAAT
GATCACCGAAAAGCTCATTAATGTATATAAAGGTGATAAGACACATCTGCATTGTGTGATCGGACCTTCAATCAGTGGCA
AGGCATATGTCGTTAATGATGACATCAGAGCAAAGTTTATGTCACTGAATCTCCATCTGGAAGACTGCTTTAAACCGAAT
GGTGATATGTATGAAATAGAGCTGAAAGAAATCAATAGACGTATCGCGCAGCATGCTGGTATTGCCGCTTCGCATATCCA
TGTCTCACAGCGCTGTACCTCAACAGGAAATGAGGATTTCTTCTCATATCGAAAAGAAGCAGGTAATACCGGCAGGATGT
TAGCTTATATCGGAAAGAGGGATAACAATGGAAGTCAGAAAGAATCTTGA

Upstream 100 bases:

>100_bases
AGCTCATTTGGTCATTCAGCACCAGTGCCTGAGCGTGAAGTACGCAATGAAACACCGGTGCAGGAAACAAGAGAGCGTCA
ATCAAGTGATGAAGGACTAG

Downstream 100 bases:

>100_bases
CATAATTAAACAGGAAATTGAAAGTGCACTTCAGAAATCTGCTGATCACAAAGCTCCGACTATTATTGCAGTGACAAAAT
ATGTTACAATAGACCGAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM
ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD
CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN
GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES

Sequences:

>Translated_309_residues
MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM
ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD
CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN
GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES
>Mature_309_residues
MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHIIGITGRNGGVSDYPELSLNM
ARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHIKEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFAD
CVPIYIYSATDNFIALGHAGWRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN
GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKRDNNGSQKES

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=268, Percent_Identity=25.7462686567164, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI190194372, Length=268, Percent_Identity=25.7462686567164, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1788945, Length=232, Percent_Identity=28.8793103448276, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 34833; Mature: 34833

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHI
CCCCEEEEEEHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEE
IGITGRNGGVSDYPELSLNMARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHI
EEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCEE
KEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFADCVPIYIYSATDNFIALGHAG
EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCC
WRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEHHHCCCC
GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKR
CCEEEEEHHHHHHHHHHHCCCCHHEEEHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECC
DNNGSQKES
CCCCCCCCC
>Mature Secondary Structure
MYQALSVIVVQEHVDQEDNESFNIRSGPFSCSTPFSILGVVMDIFKRKAVTFNYKDDEHI
CCCCEEEEEEHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEE
IGITGRNGGVSDYPELSLNMARYIEDAPENVSRNQQRVAQEINFDTSKWIFPIQKHGNHI
EEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCEE
KEVSLEDRGINITELTTALDDVDGLYTYDREVLLTMCFADCVPIYIYSATDNFIALGHAG
EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCC
WRGTVGMITEKLINVYKGDKTHLHCVIGPSISGKAYVVNDDIRAKFMSLNLHLEDCFKPN
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEHHHCCCC
GDMYEIELKEINRRIAQHAGIAASHIHVSQRCTSTGNEDFFSYRKEAGNTGRMLAYIGKR
CCEEEEEHHHHHHHHHHHCCCCHHEEEHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECC
DNNGSQKES
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA