| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222111001
Identifier: 222111001
GI number: 222111001
Start: 1923765
End: 1924835
Strand: Direct
Name: 222111001
Synonym: Dtpsy_1808
Alternate gene names: NA
Gene position: 1923765-1924835 (Clockwise)
Preceding gene: 222111000
Following gene: 222111007
Centisome position: 50.67
GC content: 60.88
Gene sequence:
>1071_bases ATGTCCATCCGTAATGCTGCCCCCGCACTGGCTGCCGCTGCGCTCTTTGGCGCGAGCACCCCATTTGCCAAGCTCTTGGT CGGCGATGTGGGCCCACTGCTGCTGGCTGGGTTGCTGTACCTGGGCAGCGGTGTTGGCTTGAGCTTGCTGCTCGGACTGC GTCGCATGCGTCCCAGCGCCGCAGATGAGCGCGCTTCCCTGCGCATTCCAAAGGCGGAATGGCCATGGCTGCTAGGCGCT GTGGCTTTTGGCGGTGTGCTTGGCCCCGTGTTCTTGCTGCTCGGGCTGACCCAGACCAGTGGCGCAGCCGCCTCGCTTTT ACTGAACATCGAGGGCGTGTTTACCGCAGTGATTGCTTGGTTTGTCTTCAAGGAAAACGCAGACCGGCAAATCGTGCTGG GCATGCTCACGATCATGGGCGGTGGCTTGCTGCTGTCTTGGGCGCCAGGGGCCGCCAGTTTTTCGATGGGAGCGCTGCTT ATCGTGGCAGCCTGCCTGTGCTGGGCGATCGACAACAACCTCACACGCAAAGTGTCCACCAACGACGCGATGCTGGTGGC AGCCATCAAAGGCTTGATTGCCGGCATCAGCAACACAAGCTTTGCCCTGCTCAGTGGTGACAGCTTGCCTGGGGTAAGCA CCTTGGGTGCCTGCATGGCTGTCGGCTTCCTGGGCTACGGCCTCAGCCTGACCCTGTTTGTCGTGGCCCTGAGAGGGTTG GGCACCGCACGAACTGGCGCGTACTTCTCGATCGCCCCGCTCTTTGGTGTCGCCATTTCCTTCGCTATCTGGCCCAGCAT GCCGGGGCTGCTGTTCTGGTTGGCTGCTGCCTTGATGGCGATTGGCACATGGTTGCACATTCGTGAGCGCCATGAGCATG TGCACACGCATGAGCCTTTAGAGCACAGCCACCGTCATCGGCATGACGAGCACCATCAACACAGCCACGATTTCGCCTGG GATGGTGTCGAGCCTCATTCCCACCCACACCAGCATGTGGCTATGACCCACAGCCACACGCATTACCCAGACATCCATCA TCGCCACCAGCATCCGAAGCGTCGCGATTGA
Upstream 100 bases:
>100_bases GATTTCTCTGAGTTCAAAGAAATCACCAGATACCTCTGATCTGCTCGCAATCCCGCCACCACCCGCGCACTTCATGTCCG AACAATCAATCTGCTGAAGC
Downstream 100 bases:
>100_bases CCATCTGGCAACGACACAAAGCAGTCACAGCAGCGCCCACCCGTGAAGACTGCTTAGGGTCGAAAGAGGCCATAGCAAGG CATTCTGCTCAGAATAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGA VAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALL IVAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAW DGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD
Sequences:
>Translated_356_residues MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGA VAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALL IVAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAW DGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD >Mature_355_residues SIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSAADERASLRIPKAEWPWLLGAV AFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAWFVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLI VAACLCWAIDNNLTRKVSTNDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGLG TARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPLEHSHRHRHDEHHQHSHDFAWD GVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 38063; Mature: 37932
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSA CCCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC ADERASLRIPKAEWPWLLGAVAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAW CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLIVAACLCWAIDNNLTRKVST HHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC NDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPL CCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EHSHRHRHDEHHQHSHDFAWDGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHCCCCCCCC >Mature Secondary Structure SIRNAAPALAAAALFGASTPFAKLLVGDVGPLLLAGLLYLGSGVGLSLLLGLRRMRPSA CCCHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC ADERASLRIPKAEWPWLLGAVAFGGVLGPVFLLLGLTQTSGAAASLLLNIEGVFTAVIAW CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FVFKENADRQIVLGMLTIMGGGLLLSWAPGAASFSMGALLIVAACLCWAIDNNLTRKVST HHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC NDAMLVAAIKGLIAGISNTSFALLSGDSLPGVSTLGACMAVGFLGYGLSLTLFVVALRGL CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GTARTGAYFSIAPLFGVAISFAIWPSMPGLLFWLAAALMAIGTWLHIRERHEHVHTHEPL CCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EHSHRHRHDEHHQHSHDFAWDGVEPHSHPHQHVAMTHSHTHYPDIHHRHQHPKRRD HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]