| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is aceE [H]
Identifier: 222110851
GI number: 222110851
Start: 1748718
End: 1751414
Strand: Direct
Name: aceE [H]
Synonym: Dtpsy_1657
Alternate gene names: 222110851
Gene position: 1748718-1751414 (Clockwise)
Preceding gene: 222110845
Following gene: 222110852
Centisome position: 46.06
GC content: 64.48
Gene sequence:
>2697_bases ATGTCTGATCCGACCAAAGTCCTGACCGCTACCGACATCGACCAACAGGAAACCCGCGAATGGCTGGACGCGCTGTCGGC AGTGATCGACAAGGAGGGGCCGGAGCGTGCCCACTTCCTGCTGGAGCAATTGCTGGAGCAGGCCCGCCAGAGCAGTATTG ACCTGCCGTTCTCCGCCAATACGGGATACGTGAACACCATCGAGCCGGACCAGGAGGCCCGCTGCCCGGGCAATATCGCC ATCGAGAAGCGCCTGCGCGCCTACATGCGCTGGAATGCCATGGCCATGGTGGTGCGCGCCAACCGCCTGCATCCGCATGA CGGCGGCGACCTGGGCGGCCACATCGGCTCCTTCGCTTCGCTGGCCTCCATGTGGGGCGCGGGCTTCAACCACTTCTGGC ACGCCGAGAGCGAGAGCCACGGCGGCGACTGCATCTATTTCCAGGGCCACAGTGCGCCCGGCATCTACGCCCGTGCCTAC CTGGAAGGCCGCATCACCGAGGACCAGCTCGAAAACTTCCGCCAGGAAGTAGGCGGCAAAGGCCTGTCCAGCTACCCGCA CCCCAAGCTGATGCCGGGCTTCTGGCAGTTCCCCACGGTGTCCATGGGCCTGGGGCCGATGATGGCCATCTACCAGGCGC GCTTTCTCAAGTACCTGCATGCCCGCGGTATCGCCAATACCGAGAACCGCAAGGTCTGGATCTTCCTGGGCGACGGCGAG ATGGATGAGCCCGAGAGCAAGGGCGCGATCAGCCTGGCCGCACGTGAAAACCTGGACAACCTGATCTTCGTTATCAACTG CAACCTGCAGCGCCTGGACGGCCCGGTGCGCGGCAACGGCAAGATCATCCAGGAGCTGGAGGGTGACTTCCGCGGTGCGG GCTGGCATGTCATCAAGCTGCTGTGGGGCAAGGGCTGGGACGAGCTGCTGGCACGCGACAAGAGCGGCAAGCTCAAGCAG CTGATGATGGAGACGCTGGACGGCGACTACCAGACCTACCGCGCCATGGACGGCGCGTATATCCGCAAGCATTTCTTTGG CAGGTACCCCGAGACGGCCAAGCTCGTGGAGCACCTGAGCGACGACGAAATCTGGGAACTGCGCCGCGGTGGTCACGAGC CCGAGAAGGTGTATGCCGCCTTCCATGCGGCCAATGAACACCAGGGCCAGCCCACGGTGTTGCTGGTCAAGACCGTCAAG GGCTATGGCATGGGCAAGGCCGGTGAGGGCAAGAACACCGTGCACCAGACCAAGAAGCTGTCGGACGAGGACATCAAGTA CATCCGCGACCGCTTCAACATCCCGATCCCCGACAGCGAGCTGGACAAGCTGCCCTACTACAAGCCGGCCGACGACACGC CGGAAATGAAGTACCTGCACGAGCGCCGCAAGGCCCTGGGCGGCTACCTGCCGCAGCGTCGCACGCACGCCGACGAGAGT TTCACCGTGCCGGCGCTGGAGACGTTCAAGGCCGTGCTGGAGCCCACCGCTGAGGGCCGCGAGATCTCCACCACCCAGGC CTACGTGCGCTTTCTCACGCAGCTGCTGCGCGACAAGGCCCTGGGTCCGCGCGTGGTGCCCATCCTGGTGGATGAGGCGC GTACCTTCGGCATGGAGGGATTGTTCCGCCAGATTGGCATCTACAACCCCAAGGGCCAGCTCTACACCCCGGTCGACCGC GACCAGGTGATGTACTACAAGGAAGACAAGGCCGGTCAGATTCTTCAGGAGGGCATCAACGAGGCGGGCGGCATGTGCTC GTGGATCGCTGCGGCGACGTCGTATTCGACGAACAACCGCATCATGATCCCGTTCTACGTGTACTACTCGATGTTCGGCT TCCAGCGCTTTGGCGACTTCGCCTGGGCCGCGGGCGACATGCAGGCGCGCGGCTTCATCCTGGGAGGCACGTCGGGCCGC ACCACGCTCAACGGCGAAGGCCTGCAGCACGAGGACGGCCACAGCCATATCCTGGCCAACACCATTCCCAACTGCGTGAG CTACGACCCGACCTTCGCGCACGAGGTGGCGGTCATCATGCAGAATGGCCTGAAGCGCATGGTGGAGAAGCAGGAAAACG TCTACTACTACATCACGCTGCTCAACGAGAACTACGCCATGCCGGGCCTGCAGCCGGGCACGGAAGAGCAGATCATCAAG GGCATGTACCTGTGCAAGGCCGGTGCCGAGGGTGACAAGCGCGTGCAGCTGCTGGGCTCGGGCTCGATCCTGCGCGAGTC GATCGAGGCGCAGAAGCTGCTCGCCGCCGACTGGGGCGTGCAGGCCGACGTGTGGAGCTGCACCAGCTTCAACGAGCTGA CCCGCGAGGGCCAAGACGTGGCGCGCTGGAACCTGCTGCACCCGCTGGAGACACCGCGCGTGTCCTTCGTGGCGCAGCAG CTGGGCGGCCGCCCGGGCCCCGTGGTGGCGTCCACCGACTACATGAAGAACTACGCCGAGCAGATCCGCGCCTTCGTCCC CGCAGGGCGCTCCTACACCGTGTTGGGTACCGACGGCTTTGGCCGCAGCGACTTCCGCTACCGCCTGCGCGAGCACTTCG AGGTCAACCGCCACTACATCACCGTGGCCGCGCTGAGCGCACTGGCCGACGAGGGTAAGCTGCCCAAGGCGAAGGTGGCC GAGGCGATTGCCAAGTACGGCATCCAGACCGAGAAGATCAACCCCTTGCACGCCTGA
Upstream 100 bases:
>100_bases TTCATATTAAGAGATGAAAAAGCATCATTTGAAATGATGAAAATTTGTGCGAAACTCGCGCCCGTATTACCGTTATTGCC ACTGAATCAAGGAGACAGGT
Downstream 100 bases:
>100_bases TGGCCCGGGAGACACGACATGGCATTGGTAAACATCCAGGTTCCCGACATCGGCGACTTCGACGAAGTCGGCGTGATCGA GCTGCTGGTCAAGGTGGGCG
Product: pyruvate dehydrogenase subunit e1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MSDPTKVLTATDIDQQETREWLDALSAVIDKEGPERAHFLLEQLLEQARQSSIDLPFSANTGYVNTIEPDQEARCPGNIA IEKRLRAYMRWNAMAMVVRANRLHPHDGGDLGGHIGSFASLASMWGAGFNHFWHAESESHGGDCIYFQGHSAPGIYARAY LEGRITEDQLENFRQEVGGKGLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKYLHARGIANTENRKVWIFLGDGE MDEPESKGAISLAARENLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGAGWHVIKLLWGKGWDELLARDKSGKLKQ LMMETLDGDYQTYRAMDGAYIRKHFFGRYPETAKLVEHLSDDEIWELRRGGHEPEKVYAAFHAANEHQGQPTVLLVKTVK GYGMGKAGEGKNTVHQTKKLSDEDIKYIRDRFNIPIPDSELDKLPYYKPADDTPEMKYLHERRKALGGYLPQRRTHADES FTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDKALGPRVVPILVDEARTFGMEGLFRQIGIYNPKGQLYTPVDR DQVMYYKEDKAGQILQEGINEAGGMCSWIAAATSYSTNNRIMIPFYVYYSMFGFQRFGDFAWAAGDMQARGFILGGTSGR TTLNGEGLQHEDGHSHILANTIPNCVSYDPTFAHEVAVIMQNGLKRMVEKQENVYYYITLLNENYAMPGLQPGTEEQIIK GMYLCKAGAEGDKRVQLLGSGSILRESIEAQKLLAADWGVQADVWSCTSFNELTREGQDVARWNLLHPLETPRVSFVAQQ LGGRPGPVVASTDYMKNYAEQIRAFVPAGRSYTVLGTDGFGRSDFRYRLREHFEVNRHYITVAALSALADEGKLPKAKVA EAIAKYGIQTEKINPLHA
Sequences:
>Translated_898_residues MSDPTKVLTATDIDQQETREWLDALSAVIDKEGPERAHFLLEQLLEQARQSSIDLPFSANTGYVNTIEPDQEARCPGNIA IEKRLRAYMRWNAMAMVVRANRLHPHDGGDLGGHIGSFASLASMWGAGFNHFWHAESESHGGDCIYFQGHSAPGIYARAY LEGRITEDQLENFRQEVGGKGLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKYLHARGIANTENRKVWIFLGDGE MDEPESKGAISLAARENLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGAGWHVIKLLWGKGWDELLARDKSGKLKQ LMMETLDGDYQTYRAMDGAYIRKHFFGRYPETAKLVEHLSDDEIWELRRGGHEPEKVYAAFHAANEHQGQPTVLLVKTVK GYGMGKAGEGKNTVHQTKKLSDEDIKYIRDRFNIPIPDSELDKLPYYKPADDTPEMKYLHERRKALGGYLPQRRTHADES FTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDKALGPRVVPILVDEARTFGMEGLFRQIGIYNPKGQLYTPVDR DQVMYYKEDKAGQILQEGINEAGGMCSWIAAATSYSTNNRIMIPFYVYYSMFGFQRFGDFAWAAGDMQARGFILGGTSGR TTLNGEGLQHEDGHSHILANTIPNCVSYDPTFAHEVAVIMQNGLKRMVEKQENVYYYITLLNENYAMPGLQPGTEEQIIK GMYLCKAGAEGDKRVQLLGSGSILRESIEAQKLLAADWGVQADVWSCTSFNELTREGQDVARWNLLHPLETPRVSFVAQQ LGGRPGPVVASTDYMKNYAEQIRAFVPAGRSYTVLGTDGFGRSDFRYRLREHFEVNRHYITVAALSALADEGKLPKAKVA EAIAKYGIQTEKINPLHA >Mature_897_residues SDPTKVLTATDIDQQETREWLDALSAVIDKEGPERAHFLLEQLLEQARQSSIDLPFSANTGYVNTIEPDQEARCPGNIAI EKRLRAYMRWNAMAMVVRANRLHPHDGGDLGGHIGSFASLASMWGAGFNHFWHAESESHGGDCIYFQGHSAPGIYARAYL EGRITEDQLENFRQEVGGKGLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKYLHARGIANTENRKVWIFLGDGEM DEPESKGAISLAARENLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGAGWHVIKLLWGKGWDELLARDKSGKLKQL MMETLDGDYQTYRAMDGAYIRKHFFGRYPETAKLVEHLSDDEIWELRRGGHEPEKVYAAFHAANEHQGQPTVLLVKTVKG YGMGKAGEGKNTVHQTKKLSDEDIKYIRDRFNIPIPDSELDKLPYYKPADDTPEMKYLHERRKALGGYLPQRRTHADESF TVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDKALGPRVVPILVDEARTFGMEGLFRQIGIYNPKGQLYTPVDRD QVMYYKEDKAGQILQEGINEAGGMCSWIAAATSYSTNNRIMIPFYVYYSMFGFQRFGDFAWAAGDMQARGFILGGTSGRT TLNGEGLQHEDGHSHILANTIPNCVSYDPTFAHEVAVIMQNGLKRMVEKQENVYYYITLLNENYAMPGLQPGTEEQIIKG MYLCKAGAEGDKRVQLLGSGSILRESIEAQKLLAADWGVQADVWSCTSFNELTREGQDVARWNLLHPLETPRVSFVAQQL GGRPGPVVASTDYMKNYAEQIRAFVPAGRSYTVLGTDGFGRSDFRYRLREHFEVNRHYITVAALSALADEGKLPKAKVAE AIAKYGIQTEKINPLHA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=890, Percent_Identity=61.685393258427, Blast_Score=1142, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 100886; Mature: 100754
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS50003 PH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPTKVLTATDIDQQETREWLDALSAVIDKEGPERAHFLLEQLLEQARQSSIDLPFSAN CCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC TGYVNTIEPDQEARCPGNIAIEKRLRAYMRWNAMAMVVRANRLHPHDGGDLGGHIGSFAS CCEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHH LASMWGAGFNHFWHAESESHGGDCIYFQGHSAPGIYARAYLEGRITEDQLENFRQEVGGK HHHHHCCCCCCEECCCCCCCCCCEEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCC GLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKYLHARGIANTENRKVWIFLGDGE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC MDEPESKGAISLAARENLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGAGWHVIKL CCCCCCCCCEEEHHHCCCCCEEEEEECCHHHCCCCCCCCCCCHHHHCCCCCCCCHHEEHH LWGKGWDELLARDKSGKLKQLMMETLDGDYQTYRAMDGAYIRKHFFGRYPETAKLVEHLS HHCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC DDEIWELRRGGHEPEKVYAAFHAANEHQGQPTVLLVKTVKGYGMGKAGEGKNTVHQTKKL CCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCC SDEDIKYIRDRFNIPIPDSELDKLPYYKPADDTPEMKYLHERRKALGGYLPQRRTHADES CHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCC FTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDKALGPRVVPILVDEARTFGMEG CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCHHH LFRQIGIYNPKGQLYTPVDRDQVMYYKEDKAGQILQEGINEAGGMCSWIAAATSYSTNNR HHHHHCCCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCE IMIPFYVYYSMFGFQRFGDFAWAAGDMQARGFILGGTSGRTTLNGEGLQHEDGHSHILAN EEEHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEECCCCCCEECCCCCCCCCCCCEEHHH TIPNCVSYDPTFAHEVAVIMQNGLKRMVEKQENVYYYITLLNENYAMPGLQPGTEEQIIK HCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHH GMYLCKAGAEGDKRVQLLGSGSILRESIEAQKLLAADWGVQADVWSCTSFNELTREGQDV HHHHEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHCCCHH ARWNLLHPLETPRVSFVAQQLGGRPGPVVASTDYMKNYAEQIRAFVPAGRSYTVLGTDGF HHHHCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC GRSDFRYRLREHFEVNRHYITVAALSALADEGKLPKAKVAEAIAKYGIQTEKINPLHA CCHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SDPTKVLTATDIDQQETREWLDALSAVIDKEGPERAHFLLEQLLEQARQSSIDLPFSAN CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC TGYVNTIEPDQEARCPGNIAIEKRLRAYMRWNAMAMVVRANRLHPHDGGDLGGHIGSFAS CCEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHH LASMWGAGFNHFWHAESESHGGDCIYFQGHSAPGIYARAYLEGRITEDQLENFRQEVGGK HHHHHCCCCCCEECCCCCCCCCCEEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHHHCCC GLSSYPHPKLMPGFWQFPTVSMGLGPMMAIYQARFLKYLHARGIANTENRKVWIFLGDGE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC MDEPESKGAISLAARENLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGAGWHVIKL CCCCCCCCCEEEHHHCCCCCEEEEEECCHHHCCCCCCCCCCCHHHHCCCCCCCCHHEEHH LWGKGWDELLARDKSGKLKQLMMETLDGDYQTYRAMDGAYIRKHFFGRYPETAKLVEHLS HHCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC DDEIWELRRGGHEPEKVYAAFHAANEHQGQPTVLLVKTVKGYGMGKAGEGKNTVHQTKKL CCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCC SDEDIKYIRDRFNIPIPDSELDKLPYYKPADDTPEMKYLHERRKALGGYLPQRRTHADES CHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCC FTVPALETFKAVLEPTAEGREISTTQAYVRFLTQLLRDKALGPRVVPILVDEARTFGMEG CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCHHH LFRQIGIYNPKGQLYTPVDRDQVMYYKEDKAGQILQEGINEAGGMCSWIAAATSYSTNNR HHHHHCCCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCE IMIPFYVYYSMFGFQRFGDFAWAAGDMQARGFILGGTSGRTTLNGEGLQHEDGHSHILAN EEEHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEECCCCCCEECCCCCCCCCCCCEEHHH TIPNCVSYDPTFAHEVAVIMQNGLKRMVEKQENVYYYITLLNENYAMPGLQPGTEEQIIK HCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHH GMYLCKAGAEGDKRVQLLGSGSILRESIEAQKLLAADWGVQADVWSCTSFNELTREGQDV HHHHEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHCCCHH ARWNLLHPLETPRVSFVAQQLGGRPGPVVASTDYMKNYAEQIRAFVPAGRSYTVLGTDGF HHHHCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC GRSDFRYRLREHFEVNRHYITVAALSALADEGKLPKAKVAEAIAKYGIQTEKINPLHA CCHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]