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The map label for this gene is rlpA [C]

Identifier: 222109817

GI number: 222109817

Start: 621175

End: 621891

Strand: Direct

Name: rlpA [C]

Synonym: Dtpsy_0601

Alternate gene names: 222109817

Gene position: 621175-621891 (Clockwise)

Preceding gene: 222109816

Following gene: 222109819

Centisome position: 16.36

GC content: 73.36

Gene sequence:

>717_bases
ATGGGACGGTGGTTGGCCGGCGTGCTGTTGGCGGCCGTGCTGGCGGGTTGCGCGGCGCCACCCGCCGATGCGCCCCCTGT
GGTAGCACCTGGCCCGACGCAGGCGCTGCCGGGACCGGCGGGCGCGCAGGCGGACAGCCCACCCGACTCCGGCGTATCGG
CCCCGCCGCGGGCCCGCAAGGAGGGCAGGGTGCGCTCGGCACCGTCTTCTCCGCGTGAAGCCGATACCGCCATCGAGCGC
GGCCGCGAAGACGAGGAAGAAAGCGGCGTGCTGCTCGGGCGCGGGCTGGCCTCCTGGTACGGCGGCAGCCTGCATGGCCG
GCGCACGGCCAGCGGCGAGCGTTTTGACCGTGGGGAACTCACCGCCGCGCACCGCACGCTGCCTTTCGGGGCGCGGGTGT
GCGTGCGCAGCCTGGTCAACGGCAAGGTGGTGGTGGTGCGCGTCAATGATCGCGGACCGTTCGCGCCAGGCCGGGTCATC
GATCTGAGCCAGGCCGCGGCGCAGGAACTGGGCATGGTGGGCCTGGGCATCAAGCCCGTGGAGATCTGGCACATGGGGCC
GGACGACGACAGCTGCCCCGAAGATCTGCCAGAACTGGACCCGTCGTCCACGCCCGCAGCCTCGCCGGCCGTAGCTCCAG
CGGGCGCCGCGCAAGCGCGCACAAATCAGGGCGCAGCGCGCACTACTCCCCGCAAGAGCCGGGCCCGGCGGCGCTAA

Upstream 100 bases:

>100_bases
CGCACCGACCTGACACCGGGTGAACGCAATGATCTGCGCCGTTTTGAGACCAACGTCATCACCCGCTGCGGCGACTTCTG
ACCCTTTGCAGCCCGGCCGC

Downstream 100 bases:

>100_bases
ACCACGGCGTCCCAGGGATCGTGCGGGCGCCGCTGGCCGGGGGCTTAACCCACCTCCAGCGTGTGGGACGCGTTGCGGTC
CTGGGCCAGCAATTGCGCCA

Product: rare lipoprotein a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MGRWLAGVLLAAVLAGCAAPPADAPPVVAPGPTQALPGPAGAQADSPPDSGVSAPPRARKEGRVRSAPSSPREADTAIER
GREDEEESGVLLGRGLASWYGGSLHGRRTASGERFDRGELTAAHRTLPFGARVCVRSLVNGKVVVVRVNDRGPFAPGRVI
DLSQAAAQELGMVGLGIKPVEIWHMGPDDDSCPEDLPELDPSSTPAASPAVAPAGAAQARTNQGAARTTPRKSRARRR

Sequences:

>Translated_238_residues
MGRWLAGVLLAAVLAGCAAPPADAPPVVAPGPTQALPGPAGAQADSPPDSGVSAPPRARKEGRVRSAPSSPREADTAIER
GREDEEESGVLLGRGLASWYGGSLHGRRTASGERFDRGELTAAHRTLPFGARVCVRSLVNGKVVVVRVNDRGPFAPGRVI
DLSQAAAQELGMVGLGIKPVEIWHMGPDDDSCPEDLPELDPSSTPAASPAVAPAGAAQARTNQGAARTTPRKSRARRR
>Mature_237_residues
GRWLAGVLLAAVLAGCAAPPADAPPVVAPGPTQALPGPAGAQADSPPDSGVSAPPRARKEGRVRSAPSSPREADTAIERG
REDEEESGVLLGRGLASWYGGSLHGRRTASGERFDRGELTAAHRTLPFGARVCVRSLVNGKVVVVRVNDRGPFAPGRVID
LSQAAAQELGMVGLGIKPVEIWHMGPDDDSCPEDLPELDPSSTPAASPAVAPAGAAQARTNQGAARTTPRKSRARRR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=77, Percent_Identity=50.6493506493506, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 24572; Mature: 24441

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRWLAGVLLAAVLAGCAAPPADAPPVVAPGPTQALPGPAGAQADSPPDSGVSAPPRARK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EGRVRSAPSSPREADTAIERGREDEEESGVLLGRGLASWYGGSLHGRRTASGERFDRGEL
CCCCCCCCCCCHHHHHHHHCCCCCCHHCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCH
TAAHRTLPFGARVCVRSLVNGKVVVVRVNDRGPFAPGRVIDLSQAAAQELGMVGLGIKPV
HHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCCCCCCEE
EIWHMGPDDDSCPEDLPELDPSSTPAASPAVAPAGAAQARTNQGAARTTPRKSRARRR
EEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GRWLAGVLLAAVLAGCAAPPADAPPVVAPGPTQALPGPAGAQADSPPDSGVSAPPRARK
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EGRVRSAPSSPREADTAIERGREDEEESGVLLGRGLASWYGGSLHGRRTASGERFDRGEL
CCCCCCCCCCCHHHHHHHHCCCCCCHHCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCH
TAAHRTLPFGARVCVRSLVNGKVVVVRVNDRGPFAPGRVIDLSQAAAQELGMVGLGIKPV
HHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHCCCCCCCCEE
EIWHMGPDDDSCPEDLPELDPSSTPAASPAVAPAGAAQARTNQGAARTTPRKSRARRR
EEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]