| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
Click here to switch to the map view.
The map label for this gene is surA [C]
Identifier: 222109651
GI number: 222109651
Start: 444003
End: 444839
Strand: Direct
Name: surA [C]
Synonym: Dtpsy_0431
Alternate gene names: 222109651
Gene position: 444003-444839 (Clockwise)
Preceding gene: 222109650
Following gene: 222109652
Centisome position: 11.69
GC content: 72.76
Gene sequence:
>837_bases ATGAGCAACACCACCTGCGGATCGGGCGGCTGCGGCTGCGCCGGCAGCACCGACAACCTCCCACAGGAAGACGCCGCCCC GGTGGCCCGCATCAATGGCGTGCCTTTGCACGCCGAAGGCGAGATCCTGCCGCCCGATGCACTGCGCCAGCGCGCCTGCA CCGAACTGCTGCGCCAGCAGGCGCAGCGCGAGGGGCTGTTGTCGCAAGACGACGCGCCGGGCCTGGACGGCGCCACCAGC GCCGAGGCATCGCAGGCCATCGAGCGCCTGCTCGACCAGGCCCTGCAAGTGCCCGAGCCCTCCGAGGAGGCCTGCCGCCG CTACCACGCCGCCCACCCGACGCTGGGCGGGCAGGGCGAGCGCGTGCGGATGCGCCACGTGCTGTTCGCGGTCACCCCGG GGGTGGATGTGAAGCTGCTGCGCCAGCGCGCCGAAGGCGTGTTGCTGGACCTGCGTTGCGCTGACGATGACGGCGCGCGC TTTGCCGCCGCGGCGGGCCAGTGGTCCAACTGCCCCAGCGGGCAGGAGGGCGGCGATCTGGGCTGGCTGTCGGCCGAGGA CTGCGCGCCCGAGTTCGCGCGCGAGGTGTTCGGCACACAGGAAGTGGGCGTGCTCTCGCGCCTGGTGCACAGCCGCTTCG GCCTGCACGTGGTCGAGGTGTGCGAGCGCCAGCCGGGCCAGGAGCTGCCCTTCGAGCAGGTGCGCGCCAGCGTGGCGCTC ATGCTGCGCCAGCAGGCCTGGGTCAACGCATTGCGCCAGTACCTGCAGCTGCTGGCGGGCGAGGCCGAGGTCGAGGGCGT GCACCTCGATGCGGCCGATACGCCGCTGGTGCAGTAG
Upstream 100 bases:
>100_bases GCGCTATGAAGTGAATAGCTACCAGCGCTTGCTGGTAGCGGGCTGGAGGCCAATTTCGCTTGAAATCGGCTTTCGGCCTC CTAGCCTCCAGGAGAACCCC
Downstream 100 bases:
>100_bases CGCCAGGCAGGGGAGACACCCATGCCTGACGACGAGCTGCTGCAACGGCTGCGCCGCTTCCATCTGGATGCCTTCCCCCA ATACCGCGAGCAATTCCAGA
Product: ppic-type peptidyl-prolyl cis-trans isomerase
Products: Isomerized Proline [C]
Alternate protein names: Peptidyl-Prolyl Cis-Trans Isomerase; Rotamase/Peptidyl-Prolyl Cis-Trans Isomerase Family Protein; Peptidyl-Prolyl Cis-Trans Isomerase PpiC-Type; Parvulin-Like Peptidyl-Prolyl Isomerase; Peptidylprolyl Isomerase; PPIC-Type PPIASE Domain Protein; Probably Peptidyl-Prolyl CIS-Trans Isomerase C; Peptidyl-Prolyl Cis-Trans Isomerase C; PPIC-Type PPIASE Domain-Containing Protein; Peptidylprolyl Isomerase Family Protein; PPIC-Type PPIASE Domain-Containing; Ppic-Type Peptidyl-Prolyl Cis-Trans Isomerase
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSNTTCGSGGCGCAGSTDNLPQEDAAPVARINGVPLHAEGEILPPDALRQRACTELLRQQAQREGLLSQDDAPGLDGATS AEASQAIERLLDQALQVPEPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDGAR FAAAAGQWSNCPSGQEGGDLGWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVVEVCERQPGQELPFEQVRASVAL MLRQQAWVNALRQYLQLLAGEAEVEGVHLDAADTPLVQ
Sequences:
>Translated_278_residues MSNTTCGSGGCGCAGSTDNLPQEDAAPVARINGVPLHAEGEILPPDALRQRACTELLRQQAQREGLLSQDDAPGLDGATS AEASQAIERLLDQALQVPEPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDGAR FAAAAGQWSNCPSGQEGGDLGWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVVEVCERQPGQELPFEQVRASVAL MLRQQAWVNALRQYLQLLAGEAEVEGVHLDAADTPLVQ >Mature_277_residues SNTTCGSGGCGCAGSTDNLPQEDAAPVARINGVPLHAEGEILPPDALRQRACTELLRQQAQREGLLSQDDAPGLDGATSA EASQAIERLLDQALQVPEPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDGARF AAAAGQWSNCPSGQEGGDLGWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVVEVCERQPGQELPFEQVRASVALM LRQQAWVNALRQYLQLLAGEAEVEGVHLDAADTPLVQ
Specific function: Assist In The Folding Of Extracytoplasmic Proteins. Essential For The Survival Of E.Coli In Stationary Phase. [C]
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 5.2.1.8 [C]
Molecular weight: Translated: 29815; Mature: 29683
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTTCGSGGCGCAGSTDNLPQEDAAPVARINGVPLHAEGEILPPDALRQRACTELLRQQ CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH AQREGLLSQDDAPGLDGATSAEASQAIERLLDQALQVPEPSEEACRRYHAAHPTLGGQGE HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC RVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDGARFAAAAGQWSNCPSGQEGGDL HHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCEEHHHCCCCCCCCCCCCCCCC GWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVVEVCERQPGQELPFEQVRASVAL CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHH MLRQQAWVNALRQYLQLLAGEAEVEGVHLDAADTPLVQ HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure SNTTCGSGGCGCAGSTDNLPQEDAAPVARINGVPLHAEGEILPPDALRQRACTELLRQQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH AQREGLLSQDDAPGLDGATSAEASQAIERLLDQALQVPEPSEEACRRYHAAHPTLGGQGE HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC RVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDGARFAAAAGQWSNCPSGQEGGDL HHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCEEHHHCCCCCCCCCCCCCCCC GWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVVEVCERQPGQELPFEQVRASVAL CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHH MLRQQAWVNALRQYLQLLAGEAEVEGVHLDAADTPLVQ HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proline Imidic Peptide Bonds In Oligopeptides [C]
Specific reaction: Cis-Trans Isomerization Of Proline Imidic Peptide Bonds In Oligopeptides. [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA