Definition Acidovorax ebreus TPSY chromosome, complete genome.
Accession NC_011992
Length 3,796,573

Click here to switch to the map view.

The map label for this gene is livJ [C]

Identifier: 222109290

GI number: 222109290

Start: 71139

End: 72296

Strand: Direct

Name: livJ [C]

Synonym: Dtpsy_0065

Alternate gene names: 222109290

Gene position: 71139-72296 (Clockwise)

Preceding gene: 222109288

Following gene: 222109292

Centisome position: 1.87

GC content: 71.59

Gene sequence:

>1158_bases
ATGCAACGCCGCCAGTTTGTCCTCCAAGCCGGCCGGGCCGCCGCCCTCGCGGCCGCGCCGGCCTTCGTGCTCCCGGCCCG
TGCGCAGGACGCGCCAGGCGTGTCCGCCAAGGCCCTCTCGATCGGCTGCTCGGCCGCCATGAGCGGCCCGCTGCTGGGCT
TTGGCACCGACATCCAGCTGGGCGCGGGCGCTGCTTTCGCGCAGGCCAACGCGCGCGGCGGTGTGCATGGGCGCACGCTG
CAGCTGCAGATGGTGGACGACGCCTATGACCCCGAGCGCACGCTGGCCAACGTCAAGCAGATCATCGGCCAGGGCAGCGC
ACTGGCGCTGCTGTCGTGCGTGGGCACGCCCAACAACACGGCCATCGTGCCGCTGGTGGAAGAGGCCGGTATTCCCTACG
TGGCGCCGATCACGGGCGCGTCGTCGCTGCGCAAGAGCACGCGCAACGTGTTCCATGTGCGCGCCAGCTACACCGACGAG
GTGCAGCGCCTCATCCAGCGCCTGGCGGGCATGGGCCTGAAGGGCATCGGCGTGGTGTACCTGGACAACGGCTACGGCCG
CGAAATGCTGGAGGACGCCACGCGCGCCCTGGCGGCGCTGAACATGAAGCCCGCCGTGCAGGTGGCCGTGGCCACCGACG
GCAAGAACCTTCCCCAGGTGCTGCAGGCCGTGGCCGCGGCGCGCCCCTCGGCCGTGCTGCTGGCGACCGCGGGCACGGTG
TCCGTGGGCCTGGTGCGCGGCATCAAGAAGGAATCGCCCGGCGTGCTCATGGCCGGCCTGAGCGTGACGCTGCCCAGCGC
CAGCGTGGGCCAGCTGGGCGAGGACGGCAGCGGCCTCGCGCTGTCCATGATCGTGCCCGACCCCAACCGCGCCAAGCTGC
AGCTGGTGCGCGACTACCAGTCCGCCATGCGCGCGCAGGTCAAGAGCGAGTTCTCGCAAGGCAGCCTGGAGGCCTACGTG
AACGCGCGCGTGCTCATCGAAGGCCTGGACCGTGCCGGCAAGGACGTGACCCAGCCCAAGCTGCGCGCGGCGCTGGCGGG
CATCCGCAACCTGGACCTGGGCGGCTTCGTGGTGGACTACAGCGGCCAGGCGCCCTACGTGGGCTCGCGCTTCATCGACC
TGGGCGTGCTGGGCAGCACGGGCCGCTTCATCGCCTGA

Upstream 100 bases:

>100_bases
GAGCTTATCCGTTTCCCGTGCGCAGTGCTTTGCGTGGCCCATCAGCGGGCCGGGGCGCCGCGGGGCAGCCTTCCCATCCA
ACCCACACATTCCTTTGACC

Downstream 100 bases:

>100_bases
AAGCGGCACCGCTGAGGCGCTTTGCGCCTCGGTGCAGCTGCCCAAGGCGGCAGCCCTTCGGGAACGTCCAAGCCTGCGCA
GGCAGCTAGTGCGCGCCGCA

Product: extracellular ligand-binding receptor

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: Abc-Type Branched-Chain Amino Acid Transport Systems; Serine/Threonine Protein Kinase; Branched-Chain Amino Acid ABC Transporter; Lipoprotein; ABC Branched-Chain Amino Acid Transporters; Signal Peptide; ABC Branched-Chain Amino Acid Transporter

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MQRRQFVLQAGRAAALAAAPAFVLPARAQDAPGVSAKALSIGCSAAMSGPLLGFGTDIQLGAGAAFAQANARGGVHGRTL
QLQMVDDAYDPERTLANVKQIIGQGSALALLSCVGTPNNTAIVPLVEEAGIPYVAPITGASSLRKSTRNVFHVRASYTDE
VQRLIQRLAGMGLKGIGVVYLDNGYGREMLEDATRALAALNMKPAVQVAVATDGKNLPQVLQAVAAARPSAVLLATAGTV
SVGLVRGIKKESPGVLMAGLSVTLPSASVGQLGEDGSGLALSMIVPDPNRAKLQLVRDYQSAMRAQVKSEFSQGSLEAYV
NARVLIEGLDRAGKDVTQPKLRAALAGIRNLDLGGFVVDYSGQAPYVGSRFIDLGVLGSTGRFIA

Sequences:

>Translated_385_residues
MQRRQFVLQAGRAAALAAAPAFVLPARAQDAPGVSAKALSIGCSAAMSGPLLGFGTDIQLGAGAAFAQANARGGVHGRTL
QLQMVDDAYDPERTLANVKQIIGQGSALALLSCVGTPNNTAIVPLVEEAGIPYVAPITGASSLRKSTRNVFHVRASYTDE
VQRLIQRLAGMGLKGIGVVYLDNGYGREMLEDATRALAALNMKPAVQVAVATDGKNLPQVLQAVAAARPSAVLLATAGTV
SVGLVRGIKKESPGVLMAGLSVTLPSASVGQLGEDGSGLALSMIVPDPNRAKLQLVRDYQSAMRAQVKSEFSQGSLEAYV
NARVLIEGLDRAGKDVTQPKLRAALAGIRNLDLGGFVVDYSGQAPYVGSRFIDLGVLGSTGRFIA
>Mature_385_residues
MQRRQFVLQAGRAAALAAAPAFVLPARAQDAPGVSAKALSIGCSAAMSGPLLGFGTDIQLGAGAAFAQANARGGVHGRTL
QLQMVDDAYDPERTLANVKQIIGQGSALALLSCVGTPNNTAIVPLVEEAGIPYVAPITGASSLRKSTRNVFHVRASYTDE
VQRLIQRLAGMGLKGIGVVYLDNGYGREMLEDATRALAALNMKPAVQVAVATDGKNLPQVLQAVAAARPSAVLLATAGTV
SVGLVRGIKKESPGVLMAGLSVTLPSASVGQLGEDGSGLALSMIVPDPNRAKLQLVRDYQSAMRAQVKSEFSQGSLEAYV
NARVLIEGLDRAGKDVTQPKLRAALAGIRNLDLGGFVVDYSGQAPYVGSRFIDLGVLGSTGRFIA

Specific function: This Protein Is A Component Of The Leucine, Isoleucine, Valine, (Threonine) Transport System, Which Is One Of The Two Periplasmic Binding Protein-Dependent Transport Systems Of The High-Affinity Transport Of The Branched-Chain Amino Acids. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39799; Mature: 39799

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRQFVLQAGRAAALAAAPAFVLPARAQDAPGVSAKALSIGCSAAMSGPLLGFGTDIQL
CCCHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCEEEECHHHHCCCCEEECCCCEEE
GAGAAFAQANARGGVHGRTLQLQMVDDAYDPERTLANVKQIIGQGSALALLSCVGTPNNT
CCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
AIVPLVEEAGIPYVAPITGASSLRKSTRNVFHVRASYTDEVQRLIQRLAGMGLKGIGVVY
EEEEEHHHCCCCEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE
LDNGYGREMLEDATRALAALNMKPAVQVAVATDGKNLPQVLQAVAAARPSAVLLATAGTV
EECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHH
SVGLVRGIKKESPGVLMAGLSVTLPSASVGQLGEDGSGLALSMIVPDPNRAKLQLVRDYQ
HHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
SAMRAQVKSEFSQGSLEAYVNARVLIEGLDRAGKDVTQPKLRAALAGIRNLDLGGFVVDY
HHHHHHHHHHHCCCCEEHHHHHHHEEEHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
SGQAPYVGSRFIDLGVLGSTGRFIA
CCCCCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MQRRQFVLQAGRAAALAAAPAFVLPARAQDAPGVSAKALSIGCSAAMSGPLLGFGTDIQL
CCCHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCEEEECHHHHCCCCEEECCCCEEE
GAGAAFAQANARGGVHGRTLQLQMVDDAYDPERTLANVKQIIGQGSALALLSCVGTPNNT
CCCCHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
AIVPLVEEAGIPYVAPITGASSLRKSTRNVFHVRASYTDEVQRLIQRLAGMGLKGIGVVY
EEEEEHHHCCCCEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE
LDNGYGREMLEDATRALAALNMKPAVQVAVATDGKNLPQVLQAVAAARPSAVLLATAGTV
EECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHH
SVGLVRGIKKESPGVLMAGLSVTLPSASVGQLGEDGSGLALSMIVPDPNRAKLQLVRDYQ
HHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
SAMRAQVKSEFSQGSLEAYVNARVLIEGLDRAGKDVTQPKLRAALAGIRNLDLGGFVVDY
HHHHHHHHHHHCCCCEEHHHHHHHEEEHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
SGQAPYVGSRFIDLGVLGSTGRFIA
CCCCCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA