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The map label for this gene is yvrC [H]

Identifier: 222102882

GI number: 222102882

Start: 559787

End: 561076

Strand: Direct

Name: yvrC [H]

Synonym: Avi_7622

Alternate gene names: 222102882

Gene position: 559787-561076 (Clockwise)

Preceding gene: 222102881

Following gene: 222102883

Centisome position: 88.61

GC content: 57.13

Gene sequence:

>1290_bases
ATGCTCGTCGTCTTGCTTCTTTTTTCGCTGACCGGCGCCGTGCTGGTGATGGTGATGGTGATCGCATTCGACCATCTCAT
CATCAGGCGCGTCAAGCCGCTTAAGCTCGCGCTGAACCGCCAGCCTTTCACCATTGTGGTTGGCGCAGGATCGCCCACCC
GTCAAGATTTAACGCAAGGAAACATAATGAAAAAACTAGTCTTCTCAGCCTTTGTCGGCCTGATGGCCATGACAGCCAGT
GCCTTCGCCGACATCACCGTTACCGATGTCAAGGGACGCACCGTCACGGTACCCAAGGTGCCGGAGCGTGTTGTCCTCAG
CTTCTATTATGAGGATTATCTTGCCATCGCCGGACCCGGCGCGCTCGACAAAGTCGTGGCTCTCTCCCTCTCCCCCTGGA
AGGATTGGCGGCCAAACCAGTTCGCGGCCTATGAAAAAGCGCTGCCAAAGCTCGCCTCCATTCCCGACATCGGTAGTACC
GAGGACAATACATTTTCGATTGAGAAGGTGATTGCGGCCAAACCCGACCTGCTCATTCTGGCGGCCTGGTCCTATGACGC
GCTCGGGGAAGGCACCAAGCAGTTAGAGGCCGCCGGCATTCCGATCGTGACGCTCGACTACAATGCCCAGACGGTCGAGA
AACATGTCGCATCCACCTTGGCACTCGGCAAGCTGATGGGGACGCAAGACCGCGCCGAAAAGCTCGCCAAAAACTACAAG
GATGCGATGGCAGACGTTCAGGCCCGCATCCAGAAAGCCGGCCCGACGGAGAAAAAGGTCTATGTCGAACTGGCTCAGAA
AGGGCCGGATGAAGTCGGGAACTCCTACGGCGATACGATGTGGGGCGCGCTGGTCGACAGGCTTGGTGGCCATAACATTG
CCAAGGGACAGATCGGCAATTGGGGGCCGCTAAGCCCGGAATATGTCCTGGCACAAAAGCCGGACCTGATTTTTCTGGGC
GGGTCGGAGTGGCTGAACAAGCCGCAATCGGTGCAGGTCGGCTTTGGGGCTGATCCGGCGGTTACCCGCCAACGCATGAA
GGCCTATCTCGGACGTCCGGGGTGGTCGGATCTGCCAGCCGTAAAAGAGGGCGGCGCGCATGCGATCTACCATGGCGGCG
CACGCACGCTGTCCGACTATGTGTATGCGCAATATATCGCCAAACAGCTCTATCCGGATGCCTTCAAGAACGTCGATCCG
GCAAAGAACATTGCTGATTATTATAATAATTGGCTGCCGATCAAGGCCGACGGTGTGTTTGTTCTCCCTTATGAAGCGAA
CGGACAATGA

Upstream 100 bases:

>100_bases
CTTGCGATGCCTCGCCTCAGGCCAGCCTTCGCTTGCCGGGCAGAAATCCGCAAAGGGCGATGTCTCTCTTCAACCGTCAT
AGCACTGGGGGACGGTTATC

Downstream 100 bases:

>100_bases
CGACCTTTTCCGCAGAGATTGATGGGATGCGCGACGGCTATCGCCGCGCATCCGCTCGTCGGACTTTAGTCATGATCGGC
GCCCTCATTTGCCTTGTTTT

Product: ABC transporter substrate binding protein (iron)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MLVVLLLFSLTGAVLVMVMVIAFDHLIIRRVKPLKLALNRQPFTIVVGAGSPTRQDLTQGNIMKKLVFSAFVGLMAMTAS
AFADITVTDVKGRTVTVPKVPERVVLSFYYEDYLAIAGPGALDKVVALSLSPWKDWRPNQFAAYEKALPKLASIPDIGST
EDNTFSIEKVIAAKPDLLILAAWSYDALGEGTKQLEAAGIPIVTLDYNAQTVEKHVASTLALGKLMGTQDRAEKLAKNYK
DAMADVQARIQKAGPTEKKVYVELAQKGPDEVGNSYGDTMWGALVDRLGGHNIAKGQIGNWGPLSPEYVLAQKPDLIFLG
GSEWLNKPQSVQVGFGADPAVTRQRMKAYLGRPGWSDLPAVKEGGAHAIYHGGARTLSDYVYAQYIAKQLYPDAFKNVDP
AKNIADYYNNWLPIKADGVFVLPYEANGQ

Sequences:

>Translated_429_residues
MLVVLLLFSLTGAVLVMVMVIAFDHLIIRRVKPLKLALNRQPFTIVVGAGSPTRQDLTQGNIMKKLVFSAFVGLMAMTAS
AFADITVTDVKGRTVTVPKVPERVVLSFYYEDYLAIAGPGALDKVVALSLSPWKDWRPNQFAAYEKALPKLASIPDIGST
EDNTFSIEKVIAAKPDLLILAAWSYDALGEGTKQLEAAGIPIVTLDYNAQTVEKHVASTLALGKLMGTQDRAEKLAKNYK
DAMADVQARIQKAGPTEKKVYVELAQKGPDEVGNSYGDTMWGALVDRLGGHNIAKGQIGNWGPLSPEYVLAQKPDLIFLG
GSEWLNKPQSVQVGFGADPAVTRQRMKAYLGRPGWSDLPAVKEGGAHAIYHGGARTLSDYVYAQYIAKQLYPDAFKNVDP
AKNIADYYNNWLPIKADGVFVLPYEANGQ
>Mature_429_residues
MLVVLLLFSLTGAVLVMVMVIAFDHLIIRRVKPLKLALNRQPFTIVVGAGSPTRQDLTQGNIMKKLVFSAFVGLMAMTAS
AFADITVTDVKGRTVTVPKVPERVVLSFYYEDYLAIAGPGALDKVVALSLSPWKDWRPNQFAAYEKALPKLASIPDIGST
EDNTFSIEKVIAAKPDLLILAAWSYDALGEGTKQLEAAGIPIVTLDYNAQTVEKHVASTLALGKLMGTQDRAEKLAKNYK
DAMADVQARIQKAGPTEKKVYVELAQKGPDEVGNSYGDTMWGALVDRLGGHNIAKGQIGNWGPLSPEYVLAQKPDLIFLG
GSEWLNKPQSVQVGFGADPAVTRQRMKAYLGRPGWSDLPAVKEGGAHAIYHGGARTLSDYVYAQYIAKQLYPDAFKNVDP
AKNIADYYNNWLPIKADGVFVLPYEANGQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 46687; Mature: 46687

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVLLLFSLTGAVLVMVMVIAFDHLIIRRVKPLKLALNRQPFTIVVGAGSPTRQDLTQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCCHHHHHHH
NIMKKLVFSAFVGLMAMTASAFADITVTDVKGRTVTVPKVPERVVLSFYYEDYLAIAGPG
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHEECCCC
ALDKVVALSLSPWKDWRPNQFAAYEKALPKLASIPDIGSTEDNTFSIEKVIAAKPDLLIL
HHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHCCCCEEEE
AAWSYDALGEGTKQLEAAGIPIVTLDYNAQTVEKHVASTLALGKLMGTQDRAEKLAKNYK
EECCCHHHCCCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
DAMADVQARIQKAGPTEKKVYVELAQKGPDEVGNSYGDTMWGALVDRLGGHNIAKGQIGN
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
WGPLSPEYVLAQKPDLIFLGGSEWLNKPQSVQVGFGADPAVTRQRMKAYLGRPGWSDLPA
CCCCCCCEEEECCCCEEEECCHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH
VKEGGAHAIYHGGARTLSDYVYAQYIAKQLYPDAFKNVDPAKNIADYYNNWLPIKADGVF
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHCCEEEEEECCEE
VLPYEANGQ
EEEECCCCC
>Mature Secondary Structure
MLVVLLLFSLTGAVLVMVMVIAFDHLIIRRVKPLKLALNRQPFTIVVGAGSPTRQDLTQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCEEEEEECCCCCHHHHHHH
NIMKKLVFSAFVGLMAMTASAFADITVTDVKGRTVTVPKVPERVVLSFYYEDYLAIAGPG
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHEECCCC
ALDKVVALSLSPWKDWRPNQFAAYEKALPKLASIPDIGSTEDNTFSIEKVIAAKPDLLIL
HHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHCCCCEEEE
AAWSYDALGEGTKQLEAAGIPIVTLDYNAQTVEKHVASTLALGKLMGTQDRAEKLAKNYK
EECCCHHHCCCHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
DAMADVQARIQKAGPTEKKVYVELAQKGPDEVGNSYGDTMWGALVDRLGGHNIAKGQIGN
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
WGPLSPEYVLAQKPDLIFLGGSEWLNKPQSVQVGFGADPAVTRQRMKAYLGRPGWSDLPA
CCCCCCCEEEECCCCEEEECCHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH
VKEGGAHAIYHGGARTLSDYVYAQYIAKQLYPDAFKNVDPAKNIADYYNNWLPIKADGVF
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHCCEEEEEECCEE
VLPYEANGQ
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]