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The map label for this gene is ytfA [C]

Identifier: 222102862

GI number: 222102862

Start: 539865

End: 540536

Strand: Direct

Name: ytfA [C]

Synonym: Avi_7595

Alternate gene names: 222102862

Gene position: 539865-540536 (Clockwise)

Preceding gene: 222102854

Following gene: 222102863

Centisome position: 85.45

GC content: 55.8

Gene sequence:

>672_bases
GTGACGGAAGAAAAGCAGACACAGAAGCAGCCTCGGCGCCGACATCCGCGCAGGCCAGATTTGTCTCAAAACCGAATTCT
GGAGGCTGCCGTTGTCGAGTTTGCGGCAAATGGTCTGACTGGCACCCGGGTTGAAGCTATTGCTGAACGGGCTGAGATCA
ACAAGCGAATGATCTATCAGTATTTCGGAAGCAAGGAATTGCTCTACCAGGCGGTGATCGAGAAGGTCTATCGCGATGTG
TGGGATGCCGAGGCGGCGTTGAATCTCGAGCAGCTACCACCGCGCGACGCGCTGATCGCCTTGGTCACGTTCGTCTGGAC
ATATTACCTTGAACACCCGGAATTCATTACCATCCTGAACTCCGAGAACCAGTTGAAAGCCATCCACTTCAAAAAGTCCC
GCGCCATCCGGGAAGGTGCTGCCAGCTCCCGGCCACTCGTCGATGACATCCTGCGGCGTGGTGAGGCGGATGGCACCTTT
CGTCTTGGAATTGATCCGATCCAGTTGAGCCTGACGATCACCTCGATCTGCTACTACTATTTCACCAACCAAGCCACCAG
TTCAATCGTCTATGGGCAGCGAATGATGACGCGGGCGGCCTTGGAACGGCGCCTCGCTTTCAACATTCAGACGGTTCTGG
CCATCGTAAGCCCTGATCGGAGCGCGCTGTGA

Upstream 100 bases:

>100_bases
GGCCGTAAAAACGCCTTATCGAACATCGGCAATGGCCGGGCCGAAATCGCCGTTTGAAACTCGGCGAGGCAAGGACGCAG
TTCTTCAAGTGAGGGTCATC

Downstream 100 bases:

>100_bases
TCAACGCGGTGCCGCAGTCGCGAACCGGTAATCCGGCGGACTGCGAAGCAAAATTGAGCCTAGATCATTTCCGCGTTTTG
TTGAATCGCTGAAATGATCT

Product: transcriptional regulator TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTEEKQTQKQPRRRHPRRPDLSQNRILEAAVVEFAANGLTGTRVEAIAERAEINKRMIYQYFGSKELLYQAVIEKVYRDV
WDAEAALNLEQLPPRDALIALVTFVWTYYLEHPEFITILNSENQLKAIHFKKSRAIREGAASSRPLVDDILRRGEADGTF
RLGIDPIQLSLTITSICYYYFTNQATSSIVYGQRMMTRAALERRLAFNIQTVLAIVSPDRSAL

Sequences:

>Translated_223_residues
MTEEKQTQKQPRRRHPRRPDLSQNRILEAAVVEFAANGLTGTRVEAIAERAEINKRMIYQYFGSKELLYQAVIEKVYRDV
WDAEAALNLEQLPPRDALIALVTFVWTYYLEHPEFITILNSENQLKAIHFKKSRAIREGAASSRPLVDDILRRGEADGTF
RLGIDPIQLSLTITSICYYYFTNQATSSIVYGQRMMTRAALERRLAFNIQTVLAIVSPDRSAL
>Mature_222_residues
TEEKQTQKQPRRRHPRRPDLSQNRILEAAVVEFAANGLTGTRVEAIAERAEINKRMIYQYFGSKELLYQAVIEKVYRDVW
DAEAALNLEQLPPRDALIALVTFVWTYYLEHPEFITILNSENQLKAIHFKKSRAIREGAASSRPLVDDILRRGEADGTFR
LGIDPIQLSLTITSICYYYFTNQATSSIVYGQRMMTRAALERRLAFNIQTVLAIVSPDRSAL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25595; Mature: 25463

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEEKQTQKQPRRRHPRRPDLSQNRILEAAVVEFAANGLTGTRVEAIAERAEINKRMIYQ
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
YFGSKELLYQAVIEKVYRDVWDAEAALNLEQLPPRDALIALVTFVWTYYLEHPEFITILN
HHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
SENQLKAIHFKKSRAIREGAASSRPLVDDILRRGEADGTFRLGIDPIQLSLTITSICYYY
CCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCEEEHHHHHHHHHHH
FTNQATSSIVYGQRMMTRAALERRLAFNIQTVLAIVSPDRSAL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure 
TEEKQTQKQPRRRHPRRPDLSQNRILEAAVVEFAANGLTGTRVEAIAERAEINKRMIYQ
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
YFGSKELLYQAVIEKVYRDVWDAEAALNLEQLPPRDALIALVTFVWTYYLEHPEFITILN
HHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
SENQLKAIHFKKSRAIREGAASSRPLVDDILRRGEADGTFRLGIDPIQLSLTITSICYYY
CCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCEEEHHHHHHHHHHH
FTNQATSSIVYGQRMMTRAALERRLAFNIQTVLAIVSPDRSAL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA