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The map label for this gene is pecM [H]

Identifier: 222102789

GI number: 222102789

Start: 452804

End: 453727

Strand: Reverse

Name: pecM [H]

Synonym: Avi_7502

Alternate gene names: 222102789

Gene position: 453727-452804 (Counterclockwise)

Preceding gene: 222102790

Following gene: 222102788

Centisome position: 71.82

GC content: 58.44

Gene sequence:

>924_bases
ATGGACAACAAGTCGAGGCAGCGGTTTGATCTGTTAATCACGGCGTTGGTTCCGCTCGTTTGGGGCAGCACCTATCTCGT
GACAACCCAATTCCTGCCGCCCGGTATTCCGCTGACCGCGGCCGCTTTACGCGCTTTGCCCGCAGGGCTTATTCTGGTGT
TGCTGCAAAGGAAAATGTTGCAGGGCCACTGGTGGTGGCGCGCGGCCCTTCTGGGGGTGCTGAATATTGGTGCTTTCTTT
TACTTCTTGTTTCTGGCGGCTTATCATCTGCCCGGCGGGATTGCGGCGCTGCTGATGTCGATTCAGCCGGTTATCGTTCT
CATTTACAGCGCGATTCTATTTCGCAACCCGGTGCGCGCAACGCAGATTCTGGCGTGCCTTTGCGCGGCGCTTGGGGTGG
CGCTTGTCGCGCTGCGCTCCGATGTCATGCTCAATACCCAAGGGGTGACTGCGGGTCTGGCCGGGGCATTCTCGATGGCG
ACGGGGATGGTACTGGCCAAGAAATTCGGTCGTCCCGACAATATGTCGCTGCTGGCGCTGACCGGCTGGCAGCTGACCTT
TGGCGGCTTGGCTCTGGTGCCCTTCGCGTTGATGACTGAGTCCTTTCCCGAAACGCTCACGCTGCGGAATATCGGCGGAC
TGAGCTATCTCAGCCTGCTGGGGGCGCTCGTGACCTATGCGCTTTGGTTTAGGGGAATCGCACGTCTGCCTGCCTTGACC
GTGTCGTTTCTTTCTCTTCTCAGCCCGCTGACAGCGGCCATTTTGGGGGCGATCTTTCTGGGCCAGACACTGACTTGGAT
TCAGTTTGGCGGCGGTATGCTGGTCCTGGTTTCGGTCTATCTGTCGCAGCCACAGGTGAGTTTCTTCGGCTTGGGCTCGG
CGTTTCGGAAGCAATTATCAAGCAAACCGGCCCAAGGAGGATAA

Upstream 100 bases:

>100_bases
TCATCGATCGAGCAGCAACCAAACCAGGAGGCGTTCATGATTCCGGGGATTGGAGATTTCGGGGATCGTTATTTCGGCAC
AATCAGTTCTGGAGGGCAAA

Downstream 100 bases:

>100_bases
TGCAGGTTACTACACCCATGTTGTGTACGTCTTTCACTCGTGAATCTCCCATCAAGAAAAGCAATTTTGATCATGACAAT
GTAATAATAACTCCCCTTAT

Product: regulator protein pecM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDNKSRQRFDLLITALVPLVWGSTYLVTTQFLPPGIPLTAAALRALPAGLILVLLQRKMLQGHWWWRAALLGVLNIGAFF
YFLFLAAYHLPGGIAALLMSIQPVIVLIYSAILFRNPVRATQILACLCAALGVALVALRSDVMLNTQGVTAGLAGAFSMA
TGMVLAKKFGRPDNMSLLALTGWQLTFGGLALVPFALMTESFPETLTLRNIGGLSYLSLLGALVTYALWFRGIARLPALT
VSFLSLLSPLTAAILGAIFLGQTLTWIQFGGGMLVLVSVYLSQPQVSFFGLGSAFRKQLSSKPAQGG

Sequences:

>Translated_307_residues
MDNKSRQRFDLLITALVPLVWGSTYLVTTQFLPPGIPLTAAALRALPAGLILVLLQRKMLQGHWWWRAALLGVLNIGAFF
YFLFLAAYHLPGGIAALLMSIQPVIVLIYSAILFRNPVRATQILACLCAALGVALVALRSDVMLNTQGVTAGLAGAFSMA
TGMVLAKKFGRPDNMSLLALTGWQLTFGGLALVPFALMTESFPETLTLRNIGGLSYLSLLGALVTYALWFRGIARLPALT
VSFLSLLSPLTAAILGAIFLGQTLTWIQFGGGMLVLVSVYLSQPQVSFFGLGSAFRKQLSSKPAQGG
>Mature_307_residues
MDNKSRQRFDLLITALVPLVWGSTYLVTTQFLPPGIPLTAAALRALPAGLILVLLQRKMLQGHWWWRAALLGVLNIGAFF
YFLFLAAYHLPGGIAALLMSIQPVIVLIYSAILFRNPVRATQILACLCAALGVALVALRSDVMLNTQGVTAGLAGAFSMA
TGMVLAKKFGRPDNMSLLALTGWQLTFGGLALVPFALMTESFPETLTLRNIGGLSYLSLLGALVTYALWFRGIARLPALT
VSFLSLLSPLTAAILGAIFLGQTLTWIQFGGGMLVLVSVYLSQPQVSFFGLGSAFRKQLSSKPAQGG

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32875; Mature: 32875

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKSRQRFDLLITALVPLVWGSTYLVTTQFLPPGIPLTAAALRALPAGLILVLLQRKML
CCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QGHWWWRAALLGVLNIGAFFYFLFLAAYHLPGGIAALLMSIQPVIVLIYSAILFRNPVRA
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TQILACLCAALGVALVALRSDVMLNTQGVTAGLAGAFSMATGMVLAKKFGRPDNMSLLAL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TGWQLTFGGLALVPFALMTESFPETLTLRNIGGLSYLSLLGALVTYALWFRGIARLPALT
ECCHHHHCHHHHHHHHHHHHCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSFLSLLSPLTAAILGAIFLGQTLTWIQFGGGMLVLVSVYLSQPQVSFFGLGSAFRKQLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHEECCHHHHHHHH
SKPAQGG
CCCCCCC
>Mature Secondary Structure
MDNKSRQRFDLLITALVPLVWGSTYLVTTQFLPPGIPLTAAALRALPAGLILVLLQRKML
CCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QGHWWWRAALLGVLNIGAFFYFLFLAAYHLPGGIAALLMSIQPVIVLIYSAILFRNPVRA
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TQILACLCAALGVALVALRSDVMLNTQGVTAGLAGAFSMATGMVLAKKFGRPDNMSLLAL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
TGWQLTFGGLALVPFALMTESFPETLTLRNIGGLSYLSLLGALVTYALWFRGIARLPALT
ECCHHHHCHHHHHHHHHHHHCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSFLSLLSPLTAAILGAIFLGQTLTWIQFGGGMLVLVSVYLSQPQVSFFGLGSAFRKQLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHEECCHHHHHHHH
SKPAQGG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]