| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102787
Identifier: 222102787
GI number: 222102787
Start: 450527
End: 451267
Strand: Reverse
Name: 222102787
Synonym: Avi_7498
Alternate gene names: NA
Gene position: 451267-450527 (Counterclockwise)
Preceding gene: 222102788
Following gene: 222102786
Centisome position: 71.43
GC content: 59.24
Gene sequence:
>741_bases ATGCTGGACCTTAGAGCTTCGTGCGAAAGCGGGGCAGCGCCTTACGGTCGGATGGTAGGACCAATGCAGAAGCTGAAGCG TCTTCAAGCTTCGATTCCGATGATATGTCCCCCTTCAACGCGTTCACCGCGAACGGTGATCATAGCGGCCCCGCATGATG TCGTCGCAGACTGTCGCTTTTCACGCGACTGGCTTTCCTCAGAAGAGCTTCATCGTCTGGGCCATTTCCGCTCCGCGCTT GATCAGAGGCGGTTCGAAGCCGCGCATCTGCTGAAACGTTCCGTTCTTGCGCGACAGCGATGTGCATTTCAGTCTCAGCC ACTGCAGCGCTTGGGTCAGGCTAGCCCTGGACCGGATGGCTCCTGTGGGGCTCGATATCGAACAGATGCCCGCCCGGGCT GGGTGGGGCGACGTTCTTCCGAATCTTGCGCCGCTTCCCGCCGGACTGTCGGCGCTGCAATACTGGACCGCCATCGAAGC CACGCTAAGGCCCAGAGAACGGCCTTTGCCTTGGATCCACGGCTATTGCAGATGTGCGCCAGTGAGGACGGCTTCCAGGC CAGGTCGCCAGAATTCGCTGTGTCGGGAAGCTGGTGTCCTGCCGACGACCATCACCTTATCGCAGTGGCCGGTGGTGGGA TCCAGCGCCTTTGGCATATTTCCCGCACCTCCAAAGATCTTGGAATACGGCTCTGTAGCTCGGTGTTTTGGCCTCTCACC AACATCTGTGAAATCGGTTAG
Upstream 100 bases:
>100_bases CGAGGAGCGACGCACCGGACGCTATGCGCTTGGCCGCGATACGCTGAGGACCCAGGAGGACGGGGTTTCACTCATCTCTT GTGCCGATTTCGCTGTCGCC
Downstream 100 bases:
>100_bases TTTACAAGCGTCTGTCAGCAAATCACTGTTTACATCTGCCGGAGCAGACTTTCATCGACTCAGAAATATGGTATTACACA ACAAATTTTCTGTTGTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MLDLRASCESGAAPYGRMVGPMQKLKRLQASIPMICPPSTRSPRTVIIAAPHDVVADCRFSRDWLSSEELHRLGHFRSAL DQRRFEAAHLLKRSVLARQRCAFQSQPLQRLGQASPGPDGSCGARYRTDARPGWVGRRSSESCAASRRTVGAAILDRHRS HAKAQRTAFALDPRLLQMCASEDGFQARSPEFAVSGSWCPADDHHLIAVAGGGIQRLWHISRTSKDLGIRLCSSVFWPLT NICEIG
Sequences:
>Translated_246_residues MLDLRASCESGAAPYGRMVGPMQKLKRLQASIPMICPPSTRSPRTVIIAAPHDVVADCRFSRDWLSSEELHRLGHFRSAL DQRRFEAAHLLKRSVLARQRCAFQSQPLQRLGQASPGPDGSCGARYRTDARPGWVGRRSSESCAASRRTVGAAILDRHRS HAKAQRTAFALDPRLLQMCASEDGFQARSPEFAVSGSWCPADDHHLIAVAGGGIQRLWHISRTSKDLGIRLCSSVFWPLT NICEIG >Mature_246_residues MLDLRASCESGAAPYGRMVGPMQKLKRLQASIPMICPPSTRSPRTVIIAAPHDVVADCRFSRDWLSSEELHRLGHFRSAL DQRRFEAAHLLKRSVLARQRCAFQSQPLQRLGQASPGPDGSCGARYRTDARPGWVGRRSSESCAASRRTVGAAILDRHRS HAKAQRTAFALDPRLLQMCASEDGFQARSPEFAVSGSWCPADDHHLIAVAGGGIQRLWHISRTSKDLGIRLCSSVFWPLT NICEIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27124; Mature: 27124
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDLRASCESGAAPYGRMVGPMQKLKRLQASIPMICPPSTRSPRTVIIAAPHDVVADCRF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHH SRDWLSSEELHRLGHFRSALDQRRFEAAHLLKRSVLARQRCAFQSQPLQRLGQASPGPDG CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SCGARYRTDARPGWVGRRSSESCAASRRTVGAAILDRHRSHAKAQRTAFALDPRLLQMCA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC SEDGFQARSPEFAVSGSWCPADDHHLIAVAGGGIQRLWHISRTSKDLGIRLCSSVFWPLT CCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHH NICEIG HHHCCC >Mature Secondary Structure MLDLRASCESGAAPYGRMVGPMQKLKRLQASIPMICPPSTRSPRTVIIAAPHDVVADCRF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHH SRDWLSSEELHRLGHFRSALDQRRFEAAHLLKRSVLARQRCAFQSQPLQRLGQASPGPDG CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SCGARYRTDARPGWVGRRSSESCAASRRTVGAAILDRHRSHAKAQRTAFALDPRLLQMCA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC SEDGFQARSPEFAVSGSWCPADDHHLIAVAGGGIQRLWHISRTSKDLGIRLCSSVFWPLT CCCCCCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHH NICEIG HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA