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The map label for this gene is gstR [C]

Identifier: 222102786

GI number: 222102786

Start: 449507

End: 450397

Strand: Reverse

Name: gstR [C]

Synonym: Avi_7497

Alternate gene names: 222102786

Gene position: 450397-449507 (Counterclockwise)

Preceding gene: 222102787

Following gene: 222102783

Centisome position: 71.29

GC content: 54.66

Gene sequence:

>891_bases
ATGGATCGATTCACCGCGTTGAAAGTATTTTGCGCAGTTATCGAAGCTCGAAGCTTTACTAAAGCTGGAAATAATATTGG
ACTCTCTCGTCCCGCGATCAGCAAGAATATTCGCGAGCTTGAGGCCCATGTTGGGGTGACCTTGGTCAATCGCACCACGC
GCGGTGTCATGCCCAGCGAGGCAGGATCGCGATATTACCAGATTGTGAGCGAGCTTTTATGGCGTCACGAACAAGCCGAT
GAAGTTGCCAGCCAGAGCGGGGCAGAGCTTCGCGGGACCTTGCGCGTGACCATGCCTGTGACATTGGGACTGCATCTGAT
CCTTCCGGTCCTTCCGCAGTTCAATGAGGAAAACCCCGAATGTTCGCTGGATCTTTGCCTCAGCGAAGAGAAGCAGCAAC
TTGTTGAGGGAAATTTCGACGTGGCTGTGCGGGCCAGTCAACGCCTGGAGGATTCGACGCTGATGTCGCGCTGCATCGGC
TCGGTGACCTATGCCATATGCGCAGCGCCCAGTTATGTGCAGAAGTCGCAAAGCCTCAAAAGCCCGAAGGATCTAGAGGA
TCATCAGCTCGTGGTACACGGTGCCAATATCGGCGACCAGAAATGGCGCTTTTCCGCTCAGGGGGAAAGTTGCTATGTTA
GCGTCCGTGCTCAGCATAAATCGAATTGTAGCGAGGCGATCAAATCGCTGACCGTGGCAGGCATGGGCATTGCTCGTATC
CCGCGCCCCTATGTGTCCCGAGAGCTTGCGGAAGGACGCTTGGTGGAACTGCTCTCCGACTGGACCATGGAACCGCTGAC
GATATATGCCATGTACCCGCAGAGCAATTTCCTGCCACGGCGCACACGTCTTTTCATCGACTTCATGTCACGTGCCTTGA
AAGTGTACTAG

Upstream 100 bases:

>100_bases
TTACATCTGCCGGAGCAGACTTTCATCGACTCAGAAATATGGTATTACACAACAAATTTTCTGTTGTATTTAAAAATAAA
GATTTTCAAGGAATGCGTTA

Downstream 100 bases:

>100_bases
GTGTAAGTTCTCAGGATATAGCAGTTGATTATCGGCAGAGTCTGACCCAGTTTGTAACTTCGCCACGATCCACGCTCTAC
TAGGCAGTGTCGCCATAAAC

Product: transcriptional regulator LysR family

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSEAGSRYYQIVSELLWRHEQAD
EVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPECSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIG
SVTYAICAAPSYVQKSQSLKSPKDLEDHQLVVHGANIGDQKWRFSAQGESCYVSVRAQHKSNCSEAIKSLTVAGMGIARI
PRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFMSRALKVY

Sequences:

>Translated_296_residues
MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSEAGSRYYQIVSELLWRHEQAD
EVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPECSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIG
SVTYAICAAPSYVQKSQSLKSPKDLEDHQLVVHGANIGDQKWRFSAQGESCYVSVRAQHKSNCSEAIKSLTVAGMGIARI
PRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFMSRALKVY
>Mature_296_residues
MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSEAGSRYYQIVSELLWRHEQAD
EVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPECSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIG
SVTYAICAAPSYVQKSQSLKSPKDLEDHQLVVHGANIGDQKWRFSAQGESCYVSVRAQHKSNCSEAIKSLTVAGMGIARI
PRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFMSRALKVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=31.1036789297659, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=31.4878892733564, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=27.5862068965517, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=27.719298245614, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=27.719298245614, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=24.9122807017544, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790011, Length=306, Percent_Identity=22.5490196078431, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=23.6434108527132, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=24.390243902439, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=142, Percent_Identity=33.0985915492958, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=142, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=140, Percent_Identity=26.4285714285714, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33099; Mature: 33099

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCC
AGSRYYQIVSELLWRHEQADEVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPE
CCHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCC
CSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIGSVTYAICAAPSYVQKSQSLK
CEEEECCCHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SPKDLEDHQLVVHGANIGDQKWRFSAQGESCYVSVRAQHKSNCSEAIKSLTVAGMGIARI
CCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEECHHCCCHHHHHHHHHHHCCCHHHC
PRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFMSRALKVY
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCC
AGSRYYQIVSELLWRHEQADEVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPE
CCHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCC
CSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIGSVTYAICAAPSYVQKSQSLK
CEEEECCCHHHHHHHCCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SPKDLEDHQLVVHGANIGDQKWRFSAQGESCYVSVRAQHKSNCSEAIKSLTVAGMGIARI
CCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEECHHCCCHHHHHHHHHHHCCCHHHC
PRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFMSRALKVY
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]