| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102747
Identifier: 222102747
GI number: 222102747
Start: 401388
End: 401936
Strand: Direct
Name: 222102747
Synonym: Avi_7432
Alternate gene names: NA
Gene position: 401388-401936 (Clockwise)
Preceding gene: 222102746
Following gene: 222102755
Centisome position: 63.53
GC content: 55.92
Gene sequence:
>549_bases ATGCGTTTGACCGATCTACAATTGGAAGACATGTCACCGGCACAGAAAAATGTGGCCGAGGAAGCTAAATCTGGCCGACG CGGTCACATTCCAGCACCGCTCAGGGCGTGGATCCACAGCCCCGAATTGGGCGCAAGGGCGCAACGCCTCGGCGAATTCG TGCGCTATAACACAGAGCTTGGTGCTGATCTGTCCGAACTTGCGATTCTTGTGGTTGCGCGCGACTGGGGCGCCGTTTTC GAGTGGGATGCGCATAAGCGGGAAGCGTTGAAAGCGGGCATAGAGCCGCATGTCATTGAGGCAATCCGAACACGCACCAG TCCCGCCTTTCCAAGCAACAAAGCCCGCATCGTCTATTGTTATACAAAGACATTATTGGAGACCCGCTTCATCCCAAGCC CGCTTCATGACGAGGCTGTGACTGTTCTGGGGCAAGCGGGCCTAGCAGAACTCGTGGGTGTGGTTGGCTACTACACGTTT GTTGCTATGACCCTCAATGCCTTTGAGATCGGGGTAGAAGAGGGCTCTGGGGATTTGGGGGTGAGCTGA
Upstream 100 bases:
>100_bases GGCGATGAATGCGGCCCGGCAGATCGAAACATCGATGCGCGGCAACCGTGAAGTTCAGGCGAAAGCCCTCCTGCTCTCGT GACACTCAGGAAATACGCGC
Downstream 100 bases:
>100_bases TCCTTGCACTGCTTGTCGGTGAGGTCAGTTTTTGTTTTTCGTTCTACCGCGCAACAGCCGTCGAACCGGGAAAAACTCAA TGCCGGTGCGCTCTGAGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: 4-Carboxymuconolactone Decarboxylase Domain Protein
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MRLTDLQLEDMSPAQKNVAEEAKSGRRGHIPAPLRAWIHSPELGARAQRLGEFVRYNTELGADLSELAILVVARDWGAVF EWDAHKREALKAGIEPHVIEAIRTRTSPAFPSNKARIVYCYTKTLLETRFIPSPLHDEAVTVLGQAGLAELVGVVGYYTF VAMTLNAFEIGVEEGSGDLGVS
Sequences:
>Translated_182_residues MRLTDLQLEDMSPAQKNVAEEAKSGRRGHIPAPLRAWIHSPELGARAQRLGEFVRYNTELGADLSELAILVVARDWGAVF EWDAHKREALKAGIEPHVIEAIRTRTSPAFPSNKARIVYCYTKTLLETRFIPSPLHDEAVTVLGQAGLAELVGVVGYYTF VAMTLNAFEIGVEEGSGDLGVS >Mature_182_residues MRLTDLQLEDMSPAQKNVAEEAKSGRRGHIPAPLRAWIHSPELGARAQRLGEFVRYNTELGADLSELAILVVARDWGAVF EWDAHKREALKAGIEPHVIEAIRTRTSPAFPSNKARIVYCYTKTLLETRFIPSPLHDEAVTVLGQAGLAELVGVVGYYTF VAMTLNAFEIGVEEGSGDLGVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19971; Mature: 19971
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTDLQLEDMSPAQKNVAEEAKSGRRGHIPAPLRAWIHSPELGARAQRLGEFVRYNTEL CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCC GADLSELAILVVARDWGAVFEWDAHKREALKAGIEPHVIEAIRTRTSPAFPSNKARIVYC CCCHHHHEEEEEECCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEE YTKTLLETRFIPSPLHDEAVTVLGQAGLAELVGVVGYYTFVAMTLNAFEIGVEEGSGDLG EHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC VS CC >Mature Secondary Structure MRLTDLQLEDMSPAQKNVAEEAKSGRRGHIPAPLRAWIHSPELGARAQRLGEFVRYNTEL CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCC GADLSELAILVVARDWGAVFEWDAHKREALKAGIEPHVIEAIRTRTSPAFPSNKARIVYC CCCHHHHEEEEEECCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEE YTKTLLETRFIPSPLHDEAVTVLGQAGLAELVGVVGYYTFVAMTLNAFEIGVEEGSGDLG EHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCC VS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA