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The map label for this gene is ocd2 [H]

Identifier: 222102721

GI number: 222102721

Start: 372196

End: 373212

Strand: Reverse

Name: ocd2 [H]

Synonym: Avi_7398

Alternate gene names: 222102721

Gene position: 373212-372196 (Counterclockwise)

Preceding gene: 222102729

Following gene: 222102720

Centisome position: 59.07

GC content: 57.13

Gene sequence:

>1017_bases
ATGTCTTCATCGCCATCCCGAACGGGATACTCGAACACACTTCTGGTGATTGATGGACCGACCGCTGAGTCTCTGGTCTC
CATTGATGAGGCCATCGTGCTTGCGGATCTCGCCTTGAGAAAAACATCGGACGAGACAGCACAACAAGACATCCGTCGGA
TTCTGACCCTTCCCGGTGCAGCCGGAACATGTCTCTCCATCATGTATGGATCAGCAAGCGAAGCCGAGCCATTTGGGGCT
AAAGTCCAGTCGGTTTACCCGCAAAACTTTGAGAATGGATTGCCCTCCCATCAGGGTGGCGTTCTGCTTTTTAATCGGCA
GACTGGACGGCCCGATGCTCTGATTAACGCCACCGCCATTACAGGTCTGCGGACACCGGCGGCAAGCGCGGTGGCCACGC
GTGCGCTTTCGCGCCCCGACGCCTGCGAACTGGCACTCATCGGTTATGGTGAGCAGGCCGAACGGCATATTGCAACGATC
CGTGCGGTCCGCGACATATCCCGTGTGCGCGTGTGGGGTCGAAATCCCGAGAAGGCAAAGTTTTTCGCAGATCACCAGAC
CAGGCTGGGCATCCCGACGGTTCCCTATGGGACGGCTCGAGCGGCGGTGGAGGGAGCGGACATCGTCTGCACGGTAACAT
CAGCAAAGTCGCCTGTGCTGATGGGAGAATGGCTGACGCCCGGCACCCATATCAACGCGGTTGGAGCGAGTGTCGCAGCT
CTCCAGGAGGTGGACCTCGAATGTGTGAAGCGCTCGCGCATCTGGGTCGATTACATGCCAATGGCAATGGCAGCAGCGTC
AGACATTTTCGAGCCTTTAGAAAAAGGCATCATTGGCCCTTCAAACCTGATCGGTGAGATTGGCGCAGCATTGAATGGCA
CCATCACCGGGCGGACCTCGACATCTGAGATCACCCTCTATCGCTCGCTCGGTGTTCCTGCCCAGGACATCCTATTTGCC
AACTTCATTTTCCAGAAGGCGAGAGGCCTTGGTCTCGGCGTCGAAGTATCATTGTGA

Upstream 100 bases:

>100_bases
ATAGGCAGAAGCTCGCCTCTCCAGGTTATCAAGTTTGCCAATCGCGGGGTTTCTCTTTGATGGTATTTCTTGCCTTGTGT
ACCACCAGCGCGAGGCCAGA

Downstream 100 bases:

>100_bases
GGATTGACATGCTTCCCAGCCAAAGACATGCGTTTTCAATTCCCGAAGACGTGATCTACCTCGATGCGGCCTACATGTCG
CCGATCCCGAACATCGCCAC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSSSPSRTGYSNTLLVIDGPTAESLVSIDEAIVLADLALRKTSDETAQQDIRRILTLPGAAGTCLSIMYGSASEAEPFGA
KVQSVYPQNFENGLPSHQGGVLLFNRQTGRPDALINATAITGLRTPAASAVATRALSRPDACELALIGYGEQAERHIATI
RAVRDISRVRVWGRNPEKAKFFADHQTRLGIPTVPYGTARAAVEGADIVCTVTSAKSPVLMGEWLTPGTHINAVGASVAA
LQEVDLECVKRSRIWVDYMPMAMAAASDIFEPLEKGIIGPSNLIGEIGAALNGTITGRTSTSEITLYRSLGVPAQDILFA
NFIFQKARGLGLGVEVSL

Sequences:

>Translated_338_residues
MSSSPSRTGYSNTLLVIDGPTAESLVSIDEAIVLADLALRKTSDETAQQDIRRILTLPGAAGTCLSIMYGSASEAEPFGA
KVQSVYPQNFENGLPSHQGGVLLFNRQTGRPDALINATAITGLRTPAASAVATRALSRPDACELALIGYGEQAERHIATI
RAVRDISRVRVWGRNPEKAKFFADHQTRLGIPTVPYGTARAAVEGADIVCTVTSAKSPVLMGEWLTPGTHINAVGASVAA
LQEVDLECVKRSRIWVDYMPMAMAAASDIFEPLEKGIIGPSNLIGEIGAALNGTITGRTSTSEITLYRSLGVPAQDILFA
NFIFQKARGLGLGVEVSL
>Mature_337_residues
SSSPSRTGYSNTLLVIDGPTAESLVSIDEAIVLADLALRKTSDETAQQDIRRILTLPGAAGTCLSIMYGSASEAEPFGAK
VQSVYPQNFENGLPSHQGGVLLFNRQTGRPDALINATAITGLRTPAASAVATRALSRPDACELALIGYGEQAERHIATIR
AVRDISRVRVWGRNPEKAKFFADHQTRLGIPTVPYGTARAAVEGADIVCTVTSAKSPVLMGEWLTPGTHINAVGASVAAL
QEVDLECVKRSRIWVDYMPMAMAAASDIFEPLEKGIIGPSNLIGEIGAALNGTITGRTSTSEITLYRSLGVPAQDILFAN
FIFQKARGLGLGVEVSL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=277, Percent_Identity=31.7689530685921, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI62241008, Length=277, Percent_Identity=31.7689530685921, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24642678, Length=248, Percent_Identity=27.4193548387097, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35793; Mature: 35662

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSPSRTGYSNTLLVIDGPTAESLVSIDEAIVLADLALRKTSDETAQQDIRRILTLPGA
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
AGTCLSIMYGSASEAEPFGAKVQSVYPQNFENGLPSHQGGVLLFNRQTGRPDALINATAI
CHHHHHHEECCCCCCCCCCCHHHHCCCCCHHCCCCCCCCCEEEEECCCCCCCCEEEEHHH
TGLRTPAASAVATRALSRPDACELALIGYGEQAERHIATIRAVRDISRVRVWGRNPEKAK
CCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
FFADHQTRLGIPTVPYGTARAAVEGADIVCTVTSAKSPVLMGEWLTPGTHINAVGASVAA
EEECCCCCCCCCCCCCCCHHHEECCCEEEEEEECCCCCEEEECCCCCCCEEHHHHHHHHH
LQEVDLECVKRSRIWVDYMPMAMAAASDIFEPLEKGIIGPSNLIGEIGAALNGTITGRTS
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCC
TSEITLYRSLGVPAQDILFANFIFQKARGLGLGVEVSL
CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
SSSPSRTGYSNTLLVIDGPTAESLVSIDEAIVLADLALRKTSDETAQQDIRRILTLPGA
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
AGTCLSIMYGSASEAEPFGAKVQSVYPQNFENGLPSHQGGVLLFNRQTGRPDALINATAI
CHHHHHHEECCCCCCCCCCCHHHHCCCCCHHCCCCCCCCCEEEEECCCCCCCCEEEEHHH
TGLRTPAASAVATRALSRPDACELALIGYGEQAERHIATIRAVRDISRVRVWGRNPEKAK
CCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
FFADHQTRLGIPTVPYGTARAAVEGADIVCTVTSAKSPVLMGEWLTPGTHINAVGASVAA
EEECCCCCCCCCCCCCCCHHHEECCCEEEEEEECCCCCEEEECCCCCCCEEHHHHHHHHH
LQEVDLECVKRSRIWVDYMPMAMAAASDIFEPLEKGIIGPSNLIGEIGAALNGTITGRTS
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCC
TSEITLYRSLGVPAQDILFANFIFQKARGLGLGVEVSL
CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]