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The map label for this gene is csd [H]

Identifier: 222102720

GI number: 222102720

Start: 371039

End: 372187

Strand: Reverse

Name: csd [H]

Synonym: Avi_7397

Alternate gene names: 222102720

Gene position: 372187-371039 (Counterclockwise)

Preceding gene: 222102721

Following gene: 222102713

Centisome position: 58.91

GC content: 57.79

Gene sequence:

>1149_bases
ATGCTTCCCAGCCAAAGACATGCGTTTTCAATTCCCGAAGACGTGATCTACCTCGATGCGGCCTACATGTCGCCGATCCC
GAACATCGCCACTGAGGCCGGTTGCGATGGGGTTCTGGTCAAGGCGGCTCCCTGGGACATGACCATCAACTCCTACTATG
ACGAGGTGGAGCGCGTCAGGGAGCTTGCCGCATCGTTCGTCGGAGCATCCATCGACGACGTCGGCGTTATTCCGGCAACC
AGCTATGGGATCGCTGTTGCCGCAGCAAATGTTCACGTTACGCCTGGCTCCGTCATCATGATGATGGACAACGAGCATAC
GTCGCACCGCTATGCCTGGTATGAATTGGCCGAGAAGAAGGGAGCGACGGTTGTAACGGTGCCTCGTCGTCCTGACCAGG
AGTGGGGTTCAGCGCTCGCAGCCGCCATCAAGGGCTCAACCGTTCCTGTGTCGGTCGTGGCCGGTACCATCGTCCATTGG
TTCGAGGGCATGAGCGTCGATATCGAGGTCGTCGCCGATGCGGCCCATGCGGTCGGAGCTGCCCTCGTGATGGATGGTAC
GCAATGGGTCGGCGCCGTGCCCTTCGATGTCTCCAGGATACGCCCTGACTTCCTATCCTTTGCAACCTACAAGTTTTTGC
TCGGCCCTTATCGTTTGGCATTCCTTTATGCCGACAAGAAATGGCAGGAAGCCGGCAAGCCGATCGAATTCCATTCGTGG
AACCGCAAGGGCGGGGAGCGGCCGGATTTCTACCTTGAAACTATGCCAGATTATCTTCCGGGTGCGCGCCGGTTCGACAT
GGGCGAACGGTCTGACTTCGCCGTGCTGCCGATTGCCATTCGTTCGCTCGAGCTTCTGCAGAGCTGGGGATCGACTGCGG
TCTTCGAGCGCCTGGTGCATCTGAACGAATTGATCTGGAAGGAAGCGGAAGCGCGGGGCTTTGAAGGTCCCCGGAAGGAC
CTCCGCGCACCGCACATATCGGTTATAGAGCTCGGACAGCGTTTCCGGCCGGATTTCGCCAGAAACCTGAAGGACAACAA
GGCCTTTGTCACCGTTCGTGGCACCAAAATGCGGATCACTCCACACGTCTACAATGAAGAGCACGATATCCGCAGGCTTT
TTGAACTGGTCGATAGCCTGACACGATAA

Upstream 100 bases:

>100_bases
CGCTCGGTGTTCCTGCCCAGGACATCCTATTTGCCAACTTCATTTTCCAGAAGGCGAGAGGCCTTGGTCTCGGCGTCGAA
GTATCATTGTGAGGATTGAC

Downstream 100 bases:

>100_bases
TCACCGTGGTGGGCGTCGTCGATCCACGAAGCCTGCCTTCCCTACAGCTTATACCAAGTCTCTGACATGCTGACGCATCC
TCGACTTGAAGACATTGAAA

Product: Selenocysteine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLPSQRHAFSIPEDVIYLDAAYMSPIPNIATEAGCDGVLVKAAPWDMTINSYYDEVERVRELAASFVGASIDDVGVIPAT
SYGIAVAAANVHVTPGSVIMMMDNEHTSHRYAWYELAEKKGATVVTVPRRPDQEWGSALAAAIKGSTVPVSVVAGTIVHW
FEGMSVDIEVVADAAHAVGAALVMDGTQWVGAVPFDVSRIRPDFLSFATYKFLLGPYRLAFLYADKKWQEAGKPIEFHSW
NRKGGERPDFYLETMPDYLPGARRFDMGERSDFAVLPIAIRSLELLQSWGSTAVFERLVHLNELIWKEAEARGFEGPRKD
LRAPHISVIELGQRFRPDFARNLKDNKAFVTVRGTKMRITPHVYNEEHDIRRLFELVDSLTR

Sequences:

>Translated_382_residues
MLPSQRHAFSIPEDVIYLDAAYMSPIPNIATEAGCDGVLVKAAPWDMTINSYYDEVERVRELAASFVGASIDDVGVIPAT
SYGIAVAAANVHVTPGSVIMMMDNEHTSHRYAWYELAEKKGATVVTVPRRPDQEWGSALAAAIKGSTVPVSVVAGTIVHW
FEGMSVDIEVVADAAHAVGAALVMDGTQWVGAVPFDVSRIRPDFLSFATYKFLLGPYRLAFLYADKKWQEAGKPIEFHSW
NRKGGERPDFYLETMPDYLPGARRFDMGERSDFAVLPIAIRSLELLQSWGSTAVFERLVHLNELIWKEAEARGFEGPRKD
LRAPHISVIELGQRFRPDFARNLKDNKAFVTVRGTKMRITPHVYNEEHDIRRLFELVDSLTR
>Mature_382_residues
MLPSQRHAFSIPEDVIYLDAAYMSPIPNIATEAGCDGVLVKAAPWDMTINSYYDEVERVRELAASFVGASIDDVGVIPAT
SYGIAVAAANVHVTPGSVIMMMDNEHTSHRYAWYELAEKKGATVVTVPRRPDQEWGSALAAAIKGSTVPVSVVAGTIVHW
FEGMSVDIEVVADAAHAVGAALVMDGTQWVGAVPFDVSRIRPDFLSFATYKFLLGPYRLAFLYADKKWQEAGKPIEFHSW
NRKGGERPDFYLETMPDYLPGARRFDMGERSDFAVLPIAIRSLELLQSWGSTAVFERLVHLNELIWKEAEARGFEGPRKD
LRAPHISVIELGQRFRPDFARNLKDNKAFVTVRGTKMRITPHVYNEEHDIRRLFELVDSLTR

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42700; Mature: 42700

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSQRHAFSIPEDVIYLDAAYMSPIPNIATEAGCDGVLVKAAPWDMTINSYYDEVERVR
CCCCCCCCCCCCCHHEEEEHHHHCCCCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
ELAASFVGASIDDVGVIPATSYGIAVAAANVHVTPGSVIMMMDNEHTSHRYAWYELAEKK
HHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHC
GATVVTVPRRPDQEWGSALAAAIKGSTVPVSVVAGTIVHWFEGMSVDIEVVADAAHAVGA
CCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHE
ALVMDGTQWVGAVPFDVSRIRPDFLSFATYKFLLGPYRLAFLYADKKWQEAGKPIEFHSW
EEEECCCHHEEECCCCHHHCCHHHHHHHHHHHHHCCEEEEEEEECCHHHHCCCCEEEECC
NRKGGERPDFYLETMPDYLPGARRFDMGERSDFAVLPIAIRSLELLQSWGSTAVFERLVH
CCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHH
LNELIWKEAEARGFEGPRKDLRAPHISVIELGQRFRPDFARNLKDNKAFVTVRGTKMRIT
HHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCEEEEEECCEEEEC
PHVYNEEHDIRRLFELVDSLTR
CCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLPSQRHAFSIPEDVIYLDAAYMSPIPNIATEAGCDGVLVKAAPWDMTINSYYDEVERVR
CCCCCCCCCCCCCHHEEEEHHHHCCCCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
ELAASFVGASIDDVGVIPATSYGIAVAAANVHVTPGSVIMMMDNEHTSHRYAWYELAEKK
HHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHC
GATVVTVPRRPDQEWGSALAAAIKGSTVPVSVVAGTIVHWFEGMSVDIEVVADAAHAVGA
CCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHE
ALVMDGTQWVGAVPFDVSRIRPDFLSFATYKFLLGPYRLAFLYADKKWQEAGKPIEFHSW
EEEECCCHHEEECCCCHHHCCHHHHHHHHHHHHHCCEEEEEEEECCHHHHCCCCEEEECC
NRKGGERPDFYLETMPDYLPGARRFDMGERSDFAVLPIAIRSLELLQSWGSTAVFERLVH
CCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHH
LNELIWKEAEARGFEGPRKDLRAPHISVIELGQRFRPDFARNLKDNKAFVTVRGTKMRIT
HHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCEEEEEECCEEEEC
PHVYNEEHDIRRLFELVDSLTR
CCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA