| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is attR [C]
Identifier: 222102672
GI number: 222102672
Start: 317614
End: 319251
Strand: Reverse
Name: attR [C]
Synonym: Avi_7339
Alternate gene names: 222102672
Gene position: 319251-317614 (Counterclockwise)
Preceding gene: 222102673
Following gene: 222102670
Centisome position: 50.53
GC content: 58.61
Gene sequence:
>1638_bases ATGAGCAGGGATGACCAAGTAAACGAGGAAGAGGCATCCTTGCGCCGCAACCGGCTCAATATCCTCACCTGGGAGCGGAA TGCGCAGGATATTGAGAGCGCAACCCATCAGGCACGCCTTCGCCAGCTTCAGACCTATGCCGGCGCGACATTTTCTCCGG GCGCTTATGTGGCGGAAAAGGCTGAAATCCATACGGATAGGCTGGTGATGGGCGCGGGCTCCTGGATTGCCGGCCATGCG CTGGTGCGTGGCGATGTCGAGCTTGGCGAGAACGTTTCGATCAATGCCTATGCCTGCATGTCTGGCAGGGTACGGGTGGG AAATGGGGTGCGGATTGCCTCGCATGTCAGCATTATCGGCTTCAATCATGGCTTCGACGATCTCGAAACGCCGATCTACC GCCAGCCGCTGACATCGCTCGGCATCGAGATTGGTGACGATGTCTGGATTGGTGCCAATGCGGTCATTCTGGATGGCGCC CGGATCGGCAGCGGTGCCATTATCGCTGCTGGTGCCGTGGTCTCGAAAGACATCCCACCACAGGCCATCGCTGGCGGCGT ACCGGCCCGCGTGCTGCGGATGCGCGGCAAAGACACGGCGTCTACCCGCAAAACCGAGGTGGTCGAGGCCGCGCTTGCCG CAATCGATGCTGCCGCTTCAACTGATTGGCGAGCGGTGGTGGAGCGATATCGTATCGGCGATGATTACAGTGCACCGGAT GCAAGCGGCAAACCCGTTACCAGCATTCGCCATCTCTGCGACGCCATCGAAATTGCCGCTGCCTTCGGTGATATCGGCTC GATATTCGATGTCGATGCCACCATCGCCCGCCTGCAAGCCGTTCAGGACCCGCAAACCGGCCTTTTCCTCGATCCTTATC GTGAAACGCAGCAGCCTCTGCATCACGATCCAATTGCCTTGTACAATGTGCTGGCGGTTGGATATGCCCTTGAACGCCTA GGATCAGCGCCACTCCACCTCTTCCGGTTCATCGAACGCCTGAGTGCGAGCGATCTTGTGCAATGGCTTGACGGGTTGCC CTGGCAAACGCGCGCCTGGCATTGCGGCGCGACCGTTGACGCCATCGCAACTGCCGTGCATTTCAACGGTCGTTATTTTG GCGCAGATGCCAATCGGCACAGTTTGTTTGGCTGGCTGAGCCTCAACTGCAATCCAGCATCCGGCCTTTGGGGTACGGTG ACACCAGAAGACGGGCTGTTGCAGCCGGTCAATGGTTTTTATCGTCTGACGCGCGGCGCTCATGCGCAATTTGGCATACC GGTTCCATACCCGAACGCCGCCATCGATTCCGTGATCGCCAATTACCGGGCTCATGAAGGATTTCGTGGACAAGGCTTCA ATGCCTGCAATCTGCTCGACACGATCCACCCGCTGCTCCTTTGCCTGAAGCAGACACCTCATCGCCGCGACGAGGCGATG GAAATCGCAACTGGCATCATTCTGCAACTGTCTACACGGTGGCAAAGTGGGCAAGGCTTCCCGTTCGCAGACGGTCATCC GCCCGGGTTGCAGGGAACTGAAATGTGGCTCACGACCTGTTGGCTTTCAGCCAAACTCCTGAACCTCTCCAGCAGCCTGT CATTCAAGCCACGAGGCATCCATCGGTACCGAGGATGA
Upstream 100 bases:
>100_bases CTCTTGCCGCTCCGCCTACTTGCCCCGATCTCGAGGTGCTGGAGCAGCAGTTTAGAGACGTTGGACGCCGCGTCGCGGCC TTCGATATCGGCTAAGCGCC
Downstream 100 bases:
>100_bases GACAGCATTTTCAAACGCTACCCCCTCGCCAACCTCTTTGCTGCGAGATATCGATTATGTCATTTTCTACGTAATTTGAA GTGGCCTCCCGGGGCGTATG
Product: transacetylase
Products: CoA; aacetyl-beta-D-galactoside [C]
Alternate protein names: NA
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MSRDDQVNEEEASLRRNRLNILTWERNAQDIESATHQARLRQLQTYAGATFSPGAYVAEKAEIHTDRLVMGAGSWIAGHA LVRGDVELGENVSINAYACMSGRVRVGNGVRIASHVSIIGFNHGFDDLETPIYRQPLTSLGIEIGDDVWIGANAVILDGA RIGSGAIIAAGAVVSKDIPPQAIAGGVPARVLRMRGKDTASTRKTEVVEAALAAIDAAASTDWRAVVERYRIGDDYSAPD ASGKPVTSIRHLCDAIEIAAAFGDIGSIFDVDATIARLQAVQDPQTGLFLDPYRETQQPLHHDPIALYNVLAVGYALERL GSAPLHLFRFIERLSASDLVQWLDGLPWQTRAWHCGATVDAIATAVHFNGRYFGADANRHSLFGWLSLNCNPASGLWGTV TPEDGLLQPVNGFYRLTRGAHAQFGIPVPYPNAAIDSVIANYRAHEGFRGQGFNACNLLDTIHPLLLCLKQTPHRRDEAM EIATGIILQLSTRWQSGQGFPFADGHPPGLQGTEMWLTTCWLSAKLLNLSSSLSFKPRGIHRYRG
Sequences:
>Translated_545_residues MSRDDQVNEEEASLRRNRLNILTWERNAQDIESATHQARLRQLQTYAGATFSPGAYVAEKAEIHTDRLVMGAGSWIAGHA LVRGDVELGENVSINAYACMSGRVRVGNGVRIASHVSIIGFNHGFDDLETPIYRQPLTSLGIEIGDDVWIGANAVILDGA RIGSGAIIAAGAVVSKDIPPQAIAGGVPARVLRMRGKDTASTRKTEVVEAALAAIDAAASTDWRAVVERYRIGDDYSAPD ASGKPVTSIRHLCDAIEIAAAFGDIGSIFDVDATIARLQAVQDPQTGLFLDPYRETQQPLHHDPIALYNVLAVGYALERL GSAPLHLFRFIERLSASDLVQWLDGLPWQTRAWHCGATVDAIATAVHFNGRYFGADANRHSLFGWLSLNCNPASGLWGTV TPEDGLLQPVNGFYRLTRGAHAQFGIPVPYPNAAIDSVIANYRAHEGFRGQGFNACNLLDTIHPLLLCLKQTPHRRDEAM EIATGIILQLSTRWQSGQGFPFADGHPPGLQGTEMWLTTCWLSAKLLNLSSSLSFKPRGIHRYRG >Mature_544_residues SRDDQVNEEEASLRRNRLNILTWERNAQDIESATHQARLRQLQTYAGATFSPGAYVAEKAEIHTDRLVMGAGSWIAGHAL VRGDVELGENVSINAYACMSGRVRVGNGVRIASHVSIIGFNHGFDDLETPIYRQPLTSLGIEIGDDVWIGANAVILDGAR IGSGAIIAAGAVVSKDIPPQAIAGGVPARVLRMRGKDTASTRKTEVVEAALAAIDAAASTDWRAVVERYRIGDDYSAPDA SGKPVTSIRHLCDAIEIAAAFGDIGSIFDVDATIARLQAVQDPQTGLFLDPYRETQQPLHHDPIALYNVLAVGYALERLG SAPLHLFRFIERLSASDLVQWLDGLPWQTRAWHCGATVDAIATAVHFNGRYFGADANRHSLFGWLSLNCNPASGLWGTVT PEDGLLQPVNGFYRLTRGAHAQFGIPVPYPNAAIDSVIANYRAHEGFRGQGFNACNLLDTIHPLLLCLKQTPHRRDEAME IATGIILQLSTRWQSGQGFPFADGHPPGLQGTEMWLTTCWLSAKLLNLSSSLSFKPRGIHRYRG
Specific function: May Assist Cellular Detoxification By Acetylating Nonmetabolizable Pyranosides, Thereby Preventing Their Reentry Into The Cell. [C]
COG id: COG0110
COG function: function code R; Acetyltransferase (isoleucine patch superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
Organism=Escherichia coli, GI1786537, Length=115, Percent_Identity=35.6521739130435, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786664, Length=92, Percent_Identity=39.1304347826087, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788345, Length=129, Percent_Identity=32.5581395348837, Blast_Score=65, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6322243, Length=105, Percent_Identity=39.0476190476191, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018357 - InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: 2.3.1.18 [C]
Molecular weight: Translated: 59251; Mature: 59119
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDDQVNEEEASLRRNRLNILTWERNAQDIESATHQARLRQLQTYAGATFSPGAYVAEK CCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH AEIHTDRLVMGAGSWIAGHALVRGDVELGENVSINAYACMSGRVRVGNGVRIASHVSIIG HHHCCCEEEEECCCCHHCCEEEECCCCCCCCCEEEEEEEECCCEEECCCEEEEEEEEEEE FNHGFDDLETPIYRQPLTSLGIEIGDDVWIGANAVILDGARIGSGAIIAAGAVVSKDIPP ECCCCHHHCCCHHHCCHHHCCCEECCCEEECCCEEEEECCEECCCCEEEECHHHCCCCCH QAIAGGVPARVLRMRGKDTASTRKTEVVEAALAAIDAAASTDWRAVVERYRIGDDYSAPD HHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC ASGKPVTSIRHLCDAIEIAAAFGDIGSIFDVDATIARLQAVQDPQTGLFLDPYRETQQPL CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCC HHDPIALYNVLAVGYALERLGSAPLHLFRFIERLSASDLVQWLDGLPWQTRAWHCGATVD CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCHHH AIATAVHFNGRYFGADANRHSLFGWLSLNCNPASGLWGTVTPEDGLLQPVNGFYRLTRGA HHHHHEEECCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC HAQFGIPVPYPNAAIDSVIANYRAHEGFRGQGFNACNLLDTIHPLLLCLKQTPHRRDEAM CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH EIATGIILQLSTRWQSGQGFPFADGHPPGLQGTEMWLTTCWLSAKLLNLSSSLSFKPRGI HHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC HRYRG CCCCC >Mature Secondary Structure SRDDQVNEEEASLRRNRLNILTWERNAQDIESATHQARLRQLQTYAGATFSPGAYVAEK CCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH AEIHTDRLVMGAGSWIAGHALVRGDVELGENVSINAYACMSGRVRVGNGVRIASHVSIIG HHHCCCEEEEECCCCHHCCEEEECCCCCCCCCEEEEEEEECCCEEECCCEEEEEEEEEEE FNHGFDDLETPIYRQPLTSLGIEIGDDVWIGANAVILDGARIGSGAIIAAGAVVSKDIPP ECCCCHHHCCCHHHCCHHHCCCEECCCEEECCCEEEEECCEECCCCEEEECHHHCCCCCH QAIAGGVPARVLRMRGKDTASTRKTEVVEAALAAIDAAASTDWRAVVERYRIGDDYSAPD HHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC ASGKPVTSIRHLCDAIEIAAAFGDIGSIFDVDATIARLQAVQDPQTGLFLDPYRETQQPL CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCC HHDPIALYNVLAVGYALERLGSAPLHLFRFIERLSASDLVQWLDGLPWQTRAWHCGATVD CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCHHH AIATAVHFNGRYFGADANRHSLFGWLSLNCNPASGLWGTVTPEDGLLQPVNGFYRLTRGA HHHHHEEECCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC HAQFGIPVPYPNAAIDSVIANYRAHEGFRGQGFNACNLLDTIHPLLLCLKQTPHRRDEAM CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH EIATGIILQLSTRWQSGQGFPFADGHPPGLQGTEMWLTTCWLSAKLLNLSSSLSFKPRGI HHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC HRYRG CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: MgSO4; Mn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 1500 {isopropyl} 1200 {isopropyl} 770 {isopropyl} 360 {isopropyl} 0.18 {acetyl-CoA}} 0.049 {acetyl-CoA}} 0.045 {acetyl-CoA}} 0.04 {acetyl-CoA}} [C]
Substrates: Acetyl-CoA; a beta-D-galactoside [C]
Specific reaction: Acetyl-CoA + a beta-D-galactoside = CoA + aacetyl-beta-D-galactoside [C]
General reaction: Acyl group transfer [C]
Inhibitor: 1, 10-Phenanthroline; Acetyl-CoA; Co2+; CoA; Cu2+; MgSO4; Mn2+; p-Chloromercuribenzoate; Zn2+ [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]