| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is 222102673
Identifier: 222102673
GI number: 222102673
Start: 319257
End: 321104
Strand: Reverse
Name: 222102673
Synonym: Avi_7340
Alternate gene names: NA
Gene position: 321104-319257 (Counterclockwise)
Preceding gene: 222102674
Following gene: 222102672
Centisome position: 50.83
GC content: 59.74
Gene sequence:
>1848_bases GTGGTTTACGATCCGGCCCAGGCCAACCCGCTCTACGGCAACCCCTTGCGCAGTCGCGATGATGTGGCAAAAGCCCTGCT CGACCTGTTCACGCCGCTCCTGCCCTATTTTTCGCAAGGCGGCGCACGGGTACGGCTTGGCGCATCCGGCGCGATTTTCG ATCATGCGGCTGCCGATCTCGAAGGTTTTGCCCGGCCCCTGTGGGGTATCGTACCCTTTGCGGCGGGCGGTGGCGATTTC CCGCACTGGGATCTTTACCGACGTGGCCTGACCCATGGCACCGATCCGCAACACGAAGACTATTGGGGCGATGTCTCTGA TCGCAACCAACGGCTGGTGGAGCTTGCCGCCATCGGCTTTGCGCTCGCCATGGTGCCGCAGCATATCTGGGAGCCTCTGG ACGATGCTGCCAAGGCCACCGTCTCGGCCTATCTGCTCCACGCCCGAGACCGCGAATACGTCGATAACAATTGGAAATTC TTCCGGGTTCTGGTCGATCTGGGGCTGGAGCGGGTCGGAGTAGAATTCGACCACACCAAGACTATTGCCTATCTCGATGA GCTGGAAGGATTCGATATTGGTGATGGCTGGTACCGCGATGGGCCGGTGCGTCGGGTGGACCACTACATTCCCTTTGCCA TGCATTTTTATGGGCTGATTTATGCCGTGCTTGCCAACGAAGACGACGCCCGTAAAACCCGTCTCCGCGACCGCGCAACG GTCTTTGCCAGGGATATCCGCCATTGGTTTGGCCCGGATGGCGCTGCACTCGCTTTTGGGCGTAGCCAGGCCTATCGTTT TGCCGCTGGTGGTTTCTGGGGCGCGCTTGCCTTCGCCGACCTTGATGCCCTGCCATGGGGTGAGATCAAGGGCTATTATA TGCGCCATATTCGCTGGTGGTCGGCATTGCCGATTGCCGACCGCGACGGTGTGTTGTCGGTCGGCTACGGCTATCCCAAT CTGCTGATGAGCGAGAGCTACAATTCGCCCGGTTCGCCCTATTGGGCGCTGAAATTCTTTCTCCCGCTGGCCCTGCCCGC CGATCACCCGTTCTGGCTGGCGCCGGAAACCGAAGCGCCGTCCTTCAATGCGCCGGTGCCGCTCGAAAAACCGGGCATGG TGGCCATGCACACGCCGGGCAATATCGTTATTCTCGCCTCCGGCCAGGAACATGACAAGATGCGTGGCTCCAACGAGAAA TACGCCAAATTCGTCTATTCAACCCGCTATACCTTCAATATCGAGGCCAATGATCGCCATTTCGATGCGGCCAGTTTTGA TGGCATGCTGGGCCTGTCGGATGATGGCGTGCATTTTAGGATGCGCGAGACGCTTGAAGAGGCGATGATTGCCGATGACA GGCTCTATTCCCGCTGGAAGCCCTGGGCGGATGTGACCGTCGAAACCTGGCTCGTTCCACAAAATCCCTGGCATATCCGC ATCCATCGGATTGCAACACCGCGCAGCCTGATGACCAGCGAAGGCGGCTTTGCCATTGCCCGCGCCGATTTCAGCCGCGA CCGTATGGAAGAAAGCGCTGGCCGCGCGGTGTGGTTCGGGCAAACGGACATCAGCACCATTGTCGATCTATCCGACCATC AACGCATCGGCCGCGCTCACGTGCCGATTGCCAATACCAATCTTTTATGGGCGAAAACCAACCTGCCGCAATTGCGTGGC GCAGTCGAACCGGGCCAAACCGTGCTGGTAACTGCAGCCTTCGCCCTGCCGCTGGGACGTGCAGCAGACGAGGCTCTTGC CGCTCCGCCTACTTGCCCCGATCTCGAGGTGCTGGAGCAGCAGTTTAGAGACGTTGGACGCCGCGTCGCGGCCTTCGATA TCGGCTAA
Upstream 100 bases:
>100_bases ACGACGGCGTCAAGGCGATCAAATAGTCCACAGCAAGTCTGGCCGCAGGTTCACACCTTCCTGCGGCCAATTCATTCGAA ACAGTTCATGGATATCGATT
Downstream 100 bases:
>100_bases GCGCCATGAGCAGGGATGACCAAGTAAACGAGGAAGAGGCATCCTTGCGCCGCAACCGGCTCAATATCCTCACCTGGGAG CGGAATGCGCAGGATATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MVYDPAQANPLYGNPLRSRDDVAKALLDLFTPLLPYFSQGGARVRLGASGAIFDHAAADLEGFARPLWGIVPFAAGGGDF PHWDLYRRGLTHGTDPQHEDYWGDVSDRNQRLVELAAIGFALAMVPQHIWEPLDDAAKATVSAYLLHARDREYVDNNWKF FRVLVDLGLERVGVEFDHTKTIAYLDELEGFDIGDGWYRDGPVRRVDHYIPFAMHFYGLIYAVLANEDDARKTRLRDRAT VFARDIRHWFGPDGAALAFGRSQAYRFAAGGFWGALAFADLDALPWGEIKGYYMRHIRWWSALPIADRDGVLSVGYGYPN LLMSESYNSPGSPYWALKFFLPLALPADHPFWLAPETEAPSFNAPVPLEKPGMVAMHTPGNIVILASGQEHDKMRGSNEK YAKFVYSTRYTFNIEANDRHFDAASFDGMLGLSDDGVHFRMRETLEEAMIADDRLYSRWKPWADVTVETWLVPQNPWHIR IHRIATPRSLMTSEGGFAIARADFSRDRMEESAGRAVWFGQTDISTIVDLSDHQRIGRAHVPIANTNLLWAKTNLPQLRG AVEPGQTVLVTAAFALPLGRAADEALAAPPTCPDLEVLEQQFRDVGRRVAAFDIG
Sequences:
>Translated_615_residues MVYDPAQANPLYGNPLRSRDDVAKALLDLFTPLLPYFSQGGARVRLGASGAIFDHAAADLEGFARPLWGIVPFAAGGGDF PHWDLYRRGLTHGTDPQHEDYWGDVSDRNQRLVELAAIGFALAMVPQHIWEPLDDAAKATVSAYLLHARDREYVDNNWKF FRVLVDLGLERVGVEFDHTKTIAYLDELEGFDIGDGWYRDGPVRRVDHYIPFAMHFYGLIYAVLANEDDARKTRLRDRAT VFARDIRHWFGPDGAALAFGRSQAYRFAAGGFWGALAFADLDALPWGEIKGYYMRHIRWWSALPIADRDGVLSVGYGYPN LLMSESYNSPGSPYWALKFFLPLALPADHPFWLAPETEAPSFNAPVPLEKPGMVAMHTPGNIVILASGQEHDKMRGSNEK YAKFVYSTRYTFNIEANDRHFDAASFDGMLGLSDDGVHFRMRETLEEAMIADDRLYSRWKPWADVTVETWLVPQNPWHIR IHRIATPRSLMTSEGGFAIARADFSRDRMEESAGRAVWFGQTDISTIVDLSDHQRIGRAHVPIANTNLLWAKTNLPQLRG AVEPGQTVLVTAAFALPLGRAADEALAAPPTCPDLEVLEQQFRDVGRRVAAFDIG >Mature_615_residues MVYDPAQANPLYGNPLRSRDDVAKALLDLFTPLLPYFSQGGARVRLGASGAIFDHAAADLEGFARPLWGIVPFAAGGGDF PHWDLYRRGLTHGTDPQHEDYWGDVSDRNQRLVELAAIGFALAMVPQHIWEPLDDAAKATVSAYLLHARDREYVDNNWKF FRVLVDLGLERVGVEFDHTKTIAYLDELEGFDIGDGWYRDGPVRRVDHYIPFAMHFYGLIYAVLANEDDARKTRLRDRAT VFARDIRHWFGPDGAALAFGRSQAYRFAAGGFWGALAFADLDALPWGEIKGYYMRHIRWWSALPIADRDGVLSVGYGYPN LLMSESYNSPGSPYWALKFFLPLALPADHPFWLAPETEAPSFNAPVPLEKPGMVAMHTPGNIVILASGQEHDKMRGSNEK YAKFVYSTRYTFNIEANDRHFDAASFDGMLGLSDDGVHFRMRETLEEAMIADDRLYSRWKPWADVTVETWLVPQNPWHIR IHRIATPRSLMTSEGGFAIARADFSRDRMEESAGRAVWFGQTDISTIVDLSDHQRIGRAHVPIANTNLLWAKTNLPQLRG AVEPGQTVLVTAAFALPLGRAADEALAAPPTCPDLEVLEQQFRDVGRRVAAFDIG
Specific function: Unknown
COG id: COG4289
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68982; Mature: 68982
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYDPAQANPLYGNPLRSRDDVAKALLDLFTPLLPYFSQGGARVRLGASGAIFDHAAADL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH EGFARPLWGIVPFAAGGGDFPHWDLYRRGLTHGTDPQHEDYWGDVSDRNQRLVELAAIGF HHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ALAMVPQHIWEPLDDAAKATVSAYLLHARDREYVDNNWKFFRVLVDLGLERVGVEFDHTK HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCHHHHCCEECCCH TIAYLDELEGFDIGDGWYRDGPVRRVDHYIPFAMHFYGLIYAVLANEDDARKTRLRDRAT HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VFARDIRHWFGPDGAALAFGRSQAYRFAAGGFWGALAFADLDALPWGEIKGYYMRHIRWW HHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SALPIADRDGVLSVGYGYPNLLMSESYNSPGSPYWALKFFLPLALPADHPFWLAPETEAP HCCCCCCCCCEEEECCCCCCHHEECCCCCCCCCEEEEEEHHHHCCCCCCCEEECCCCCCC SFNAPVPLEKPGMVAMHTPGNIVILASGQEHDKMRGSNEKYAKFVYSTRYTFNIEANDRH CCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHCCCCHHHHEEEEEEEEEEEEECCCCC FDAASFDGMLGLSDDGVHFRMRETLEEAMIADDRLYSRWKPWADVTVETWLVPQNPWHIR CCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEE IHRIATPRSLMTSEGGFAIARADFSRDRMEESAGRAVWFGQTDISTIVDLSDHQRIGRAH EEEECCCHHHHCCCCCEEEEECCCCHHHHHHHCCCEEEECCCCHHHHEECCHHHHCCCEE VPIANTNLLWAKTNLPQLRGAVEPGQTVLVTAAFALPLGRAADEALAAPPTCPDLEVLEQ CCEECCEEEEEECCCHHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHCCCCCCCCHHHHHH QFRDVGRRVAAFDIG HHHHHCCEEEEEECC >Mature Secondary Structure MVYDPAQANPLYGNPLRSRDDVAKALLDLFTPLLPYFSQGGARVRLGASGAIFDHAAADL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH EGFARPLWGIVPFAAGGGDFPHWDLYRRGLTHGTDPQHEDYWGDVSDRNQRLVELAAIGF HHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH ALAMVPQHIWEPLDDAAKATVSAYLLHARDREYVDNNWKFFRVLVDLGLERVGVEFDHTK HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCHHHHCCEECCCH TIAYLDELEGFDIGDGWYRDGPVRRVDHYIPFAMHFYGLIYAVLANEDDARKTRLRDRAT HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VFARDIRHWFGPDGAALAFGRSQAYRFAAGGFWGALAFADLDALPWGEIKGYYMRHIRWW HHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SALPIADRDGVLSVGYGYPNLLMSESYNSPGSPYWALKFFLPLALPADHPFWLAPETEAP HCCCCCCCCCEEEECCCCCCHHEECCCCCCCCCEEEEEEHHHHCCCCCCCEEECCCCCCC SFNAPVPLEKPGMVAMHTPGNIVILASGQEHDKMRGSNEKYAKFVYSTRYTFNIEANDRH CCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHCCCCHHHHEEEEEEEEEEEEECCCCC FDAASFDGMLGLSDDGVHFRMRETLEEAMIADDRLYSRWKPWADVTVETWLVPQNPWHIR CCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEE IHRIATPRSLMTSEGGFAIARADFSRDRMEESAGRAVWFGQTDISTIVDLSDHQRIGRAH EEEECCCHHHHCCCCCEEEEECCCCHHHHHHHCCCEEEECCCCHHHHEECCHHHHCCCEE VPIANTNLLWAKTNLPQLRGAVEPGQTVLVTAAFALPLGRAADEALAAPPTCPDLEVLEQ CCEECCEEEEEECCCHHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHCCCCCCCCHHHHHH QFRDVGRRVAAFDIG HHHHHCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA