| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102623
Identifier: 222102623
GI number: 222102623
Start: 233401
End: 233913
Strand: Reverse
Name: 222102623
Synonym: Avi_7275
Alternate gene names: NA
Gene position: 233913-233401 (Counterclockwise)
Preceding gene: 222102626
Following gene: 222102620
Centisome position: 37.02
GC content: 57.12
Gene sequence:
>513_bases ATGAACAAGGTTCTTGCAAGCGCGATTACCGTGGCGATGACATGGATGATGACGGCGGCCGGTGCGCACGCCGACGAGTC CGCTTTCTTGAAAACGCTGGCGGGAAGCTGGAGCGGTAAAGGAACGGTCAAGGTGCGCACGAATGCACCCACGATCAATG TCACCTGCAGATTCAAATCGAACACGACGGCTCAATCGCTGGCGTTGAATGGACGCTGTACGAGCCTCGTTGTGTTTTCT CGTGCCATCAGCGCCGATTTGAAAATCAACGGCGCGACCTATAGCGGCTCTTACGTGGGGGCGGGTACAGGCGTCGCGGG CTTGAACGGCAGACGTGGTGGAGATGCCATCAACCTTGCAATCAATTGGGCGAAAGAGGTCAATGGTGATCGACGCGCGC AGATGACAATCGAAAAAGTTGGAGCTTCCGGCATGCGCCTGACGACTGTTGATACCGACCCGGCCACAGGCAAACCGATC GTTACCAGTCGGATCGACCTGCGTCGGAGCTGA
Upstream 100 bases:
>100_bases GAACTTCTTGCCCGGCTAAAGGGTTGTGGGGGTGTAACAATCTCACTTCAATCTGCAGAACATCCAGGTAATGGAGTTCC CCTGTCTGAAAGACACGATT
Downstream 100 bases:
>100_bases TCAATTCAACTCTGAACCCAGGTCATTGTGGATCGACAAGCGTCATTAATTCAGCCCGAAAATCAACAACGGTCGTTACA GCGCGCCAAACGTGTCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI VTSRIDLRRS
Sequences:
>Translated_170_residues MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI VTSRIDLRRS >Mature_170_residues MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI VTSRIDLRRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17738; Mature: 17738
Theoretical pI: Translated: 11.06; Mature: 11.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKS CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECC NTTAQSLALNGRCTSLVVFSRAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLA CCCHHHEEECCCCCEEEEEHHHHCCCEEEECEEECCCEEECCCCCCCCCCCCCCCEEEEE INWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPIVTSRIDLRRS EEEHHHCCCCCHHEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKS CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECC NTTAQSLALNGRCTSLVVFSRAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLA CCCHHHEEECCCCCEEEEEHHHHCCCEEEECEEECCCEEECCCCCCCCCCCCCCCEEEEE INWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPIVTSRIDLRRS EEEHHHCCCCCHHEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA