Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is 222102623

Identifier: 222102623

GI number: 222102623

Start: 233401

End: 233913

Strand: Reverse

Name: 222102623

Synonym: Avi_7275

Alternate gene names: NA

Gene position: 233913-233401 (Counterclockwise)

Preceding gene: 222102626

Following gene: 222102620

Centisome position: 37.02

GC content: 57.12

Gene sequence:

>513_bases
ATGAACAAGGTTCTTGCAAGCGCGATTACCGTGGCGATGACATGGATGATGACGGCGGCCGGTGCGCACGCCGACGAGTC
CGCTTTCTTGAAAACGCTGGCGGGAAGCTGGAGCGGTAAAGGAACGGTCAAGGTGCGCACGAATGCACCCACGATCAATG
TCACCTGCAGATTCAAATCGAACACGACGGCTCAATCGCTGGCGTTGAATGGACGCTGTACGAGCCTCGTTGTGTTTTCT
CGTGCCATCAGCGCCGATTTGAAAATCAACGGCGCGACCTATAGCGGCTCTTACGTGGGGGCGGGTACAGGCGTCGCGGG
CTTGAACGGCAGACGTGGTGGAGATGCCATCAACCTTGCAATCAATTGGGCGAAAGAGGTCAATGGTGATCGACGCGCGC
AGATGACAATCGAAAAAGTTGGAGCTTCCGGCATGCGCCTGACGACTGTTGATACCGACCCGGCCACAGGCAAACCGATC
GTTACCAGTCGGATCGACCTGCGTCGGAGCTGA

Upstream 100 bases:

>100_bases
GAACTTCTTGCCCGGCTAAAGGGTTGTGGGGGTGTAACAATCTCACTTCAATCTGCAGAACATCCAGGTAATGGAGTTCC
CCTGTCTGAAAGACACGATT

Downstream 100 bases:

>100_bases
TCAATTCAACTCTGAACCCAGGTCATTGTGGATCGACAAGCGTCATTAATTCAGCCCGAAAATCAACAACGGTCGTTACA
GCGCGCCAAACGTGTCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS
RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI
VTSRIDLRRS

Sequences:

>Translated_170_residues
MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS
RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI
VTSRIDLRRS
>Mature_170_residues
MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKSNTTAQSLALNGRCTSLVVFS
RAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLAINWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPI
VTSRIDLRRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17738; Mature: 17738

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKS
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECC
NTTAQSLALNGRCTSLVVFSRAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLA
CCCHHHEEECCCCCEEEEEHHHHCCCEEEECEEECCCEEECCCCCCCCCCCCCCCEEEEE
INWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPIVTSRIDLRRS
EEEHHHCCCCCHHEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNKVLASAITVAMTWMMTAAGAHADESAFLKTLAGSWSGKGTVKVRTNAPTINVTCRFKS
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECC
NTTAQSLALNGRCTSLVVFSRAISADLKINGATYSGSYVGAGTGVAGLNGRRGGDAINLA
CCCHHHEEECCCCCEEEEEHHHHCCCEEEECEEECCCEEECCCCCCCCCCCCCCCEEEEE
INWAKEVNGDRRAQMTIEKVGASGMRLTTVDTDPATGKPIVTSRIDLRRS
EEEHHHCCCCCHHEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA