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The map label for this gene is 222102626

Identifier: 222102626

GI number: 222102626

Start: 235794

End: 236444

Strand: Reverse

Name: 222102626

Synonym: Avi_7278

Alternate gene names: NA

Gene position: 236444-235794 (Counterclockwise)

Preceding gene: 222102632

Following gene: 222102623

Centisome position: 37.43

GC content: 58.06

Gene sequence:

>651_bases
ATGGCTGGCGGAACCGCGCTCAGGCGTGCCGAAATCGGGCAAGAGCGTCGTGAAAAGACGAGACAGAAGCTCATCGCTGC
GGCGGCGCGCGTCATCGCCGCCAATGGTGACAAGACCGCGACGATCGACGATTTCATCAGGGCGGCGGGCGTTGCCCGGG
GAACGTTCTACAACTACTTTCCCACCCGCGAGAATTTGCTGGATGCATTGTGGACGCAAGTTGGCAAGGATCCATTTCTT
GAAATCGGCAAGGCTTGCGCCTCAATCAGCGATCCGGTCGAGCGGTTGATTGCACAGGCTTGGCGCATATTGATCCGGTC
AGGCGAAGACCAGGCTTGGGGCTGGCTGATCTTCGCGTTGTCCGGCAATGCCGAAACAGTCAACTCTGACCTGCGGGCCT
ATCCTGCACCTGATCTTAAAGCCGGTTTGAGCGCGGGACGGCTGCATTACGACCATCTGGACAGTGCTCGAGACTTCGTT
GTCGGCGCGGTCCGGGCTGGTATGAAAACCCAATTGAGCGGGCGTGGCTCGAGCGAATATGCGCACGACATATGCAAAAT
GATCCTGCTTGCTCTCGCAGTCCCTACGGAGGAAGCCAATAGGATTATGGGATCTGCCACAAGAACAGGCGTTGGAGTAG
CGGCGGCTTAA

Upstream 100 bases:

>100_bases
TGTACGATATGAAGTTGGACATATTTTGTTAATATGAACTATTCGAGTACACTCTTTTGAATGGGCCACTCACAGCGGGC
CGATATAAACTGGAGAGACC

Downstream 100 bases:

>100_bases
TCCATATAGCGACCGACAACCGAATACCTCTGCGCCGTCCCTATTCTTCGTCGCTCTCTGGCTCGCCTGCAATCGGTCCC
TCGCGCACAGCATTTCTACT

Product: Transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; TetR Family Transcriptional Regulator

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MAGGTALRRAEIGQERREKTRQKLIAAAARVIAANGDKTATIDDFIRAAGVARGTFYNYFPTRENLLDALWTQVGKDPFL
EIGKACASISDPVERLIAQAWRILIRSGEDQAWGWLIFALSGNAETVNSDLRAYPAPDLKAGLSAGRLHYDHLDSARDFV
VGAVRAGMKTQLSGRGSSEYAHDICKMILLALAVPTEEANRIMGSATRTGVGVAAA

Sequences:

>Translated_216_residues
MAGGTALRRAEIGQERREKTRQKLIAAAARVIAANGDKTATIDDFIRAAGVARGTFYNYFPTRENLLDALWTQVGKDPFL
EIGKACASISDPVERLIAQAWRILIRSGEDQAWGWLIFALSGNAETVNSDLRAYPAPDLKAGLSAGRLHYDHLDSARDFV
VGAVRAGMKTQLSGRGSSEYAHDICKMILLALAVPTEEANRIMGSATRTGVGVAAA
>Mature_215_residues
AGGTALRRAEIGQERREKTRQKLIAAAARVIAANGDKTATIDDFIRAAGVARGTFYNYFPTRENLLDALWTQVGKDPFLE
IGKACASISDPVERLIAQAWRILIRSGEDQAWGWLIFALSGNAETVNSDLRAYPAPDLKAGLSAGRLHYDHLDSARDFVV
GAVRAGMKTQLSGRGSSEYAHDICKMILLALAVPTEEANRIMGSATRTGVGVAAA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23246; Mature: 23114

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGTALRRAEIGQERREKTRQKLIAAAARVIAANGDKTATIDDFIRAAGVARGTFYNYF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCC
PTRENLLDALWTQVGKDPFLEIGKACASISDPVERLIAQAWRILIRSGEDQAWGWLIFAL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
SGNAETVNSDLRAYPAPDLKAGLSAGRLHYDHLDSARDFVVGAVRAGMKTQLSGRGSSEY
CCCCHHHCCHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHH
AHDICKMILLALAVPTEEANRIMGSATRTGVGVAAA
HHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure 
AGGTALRRAEIGQERREKTRQKLIAAAARVIAANGDKTATIDDFIRAAGVARGTFYNYF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCCC
PTRENLLDALWTQVGKDPFLEIGKACASISDPVERLIAQAWRILIRSGEDQAWGWLIFAL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
SGNAETVNSDLRAYPAPDLKAGLSAGRLHYDHLDSARDFVVGAVRAGMKTQLSGRGSSEY
CCCCHHHCCHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHH
AHDICKMILLALAVPTEEANRIMGSATRTGVGVAAA
HHHHHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA