| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102447
Identifier: 222102447
GI number: 222102447
Start: 43079
End: 43312
Strand: Reverse
Name: 222102447
Synonym: Avi_7046
Alternate gene names: NA
Gene position: 43312-43079 (Counterclockwise)
Preceding gene: 222102448
Following gene: 222102443
Centisome position: 6.86
GC content: 54.7
Gene sequence:
>234_bases ATGGAGATTGATGAGGACAAGATCGATGACGCGGTTTTGGCACTGCTATGGCTGACGCTGCATAACGAGGGTTGTGCGTG GAAAGGCTTCGACTGGGCAACGACGGATCGACTTCATAAGAAGGGCATGATCGGCGACCCGGTTAACACGTCAAAGTCGT TGATCCTGACCGATGAAGGCTTGGAGCGTTCGGAGGCGTTGTTCCGAGAGTTGTTCACCCGACCGGCGCTATAG
Upstream 100 bases:
>100_bases AGCTGACACGGATTTTATCTTTGACAGGAAGATACGAGGAATCGTATCCATCCGAGCAGAACCGCGGGATTTTGCTCGCC GCGCGTGATAATGTGGGTCC
Downstream 100 bases:
>100_bases CTATCCCTTTGCGCAACTTCCATTGCCAAGGCAGCAGTTCGTGCAGGCGGGTGACGGGGAGATCGGCGATGCGGGTGAAC ACATCGGCAAGCCATGCCTT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 77; Mature: 77
Protein sequence:
>77_residues MEIDEDKIDDAVLALLWLTLHNEGCAWKGFDWATTDRLHKKGMIGDPVNTSKSLILTDEGLERSEALFRELFTRPAL
Sequences:
>Translated_77_residues MEIDEDKIDDAVLALLWLTLHNEGCAWKGFDWATTDRLHKKGMIGDPVNTSKSLILTDEGLERSEALFRELFTRPAL >Mature_77_residues MEIDEDKIDDAVLALLWLTLHNEGCAWKGFDWATTDRLHKKGMIGDPVNTSKSLILTDEGLERSEALFRELFTRPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8759; Mature: 8759
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIDEDKIDDAVLALLWLTLHNEGCAWKGFDWATTDRLHKKGMIGDPVNTSKSLILTDEG CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCC LERSEALFRELFTRPAL CCHHHHHHHHHHHCCCC >Mature Secondary Structure MEIDEDKIDDAVLALLWLTLHNEGCAWKGFDWATTDRLHKKGMIGDPVNTSKSLILTDEG CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCC LERSEALFRELFTRPAL CCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]