| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is yusZ [H]
Identifier: 222102440
GI number: 222102440
Start: 37605
End: 38432
Strand: Reverse
Name: yusZ [H]
Synonym: Avi_7039
Alternate gene names: 222102440
Gene position: 38432-37605 (Counterclockwise)
Preceding gene: 222102442
Following gene: 222102436
Centisome position: 6.08
GC content: 58.33
Gene sequence:
>828_bases ATGTCGAGAAAGACCTTTTTCATCACCGGCGCAAATTCCGGTTTCGGCCTGGCCATCGCTACAGCTGCTGCCCAGATGGG CCATCAGGTGATCGGCACCGTCCGATCCGAGATAGCACGCTCGGCGCTTGCCGCAGCCGTACCCGCCATTCACCCCGTCC TTTGCGACGTCACCGCCTTCGACCAGATTCCGGATGTCGTCCGTGATACGGAAGACAAGCACGGGCCGGTCGATGTGCTC ATCAACAATGCCGGTTACGGCCACGAGGGCGTCATCGAAGAATCGCCTCTCGAACAGATGCGCAGACAGTTCGACGTGAA CGTCTTTGGCGCTGTAGCTGTCGCCAAGGCGTTTATTCCCAGGTTCCGCGAACGCCGCCAGGGTTTCATCGTCAATGTCA CGTCGATGGGCGGCATGATCACCATGCCCGGTATCGGGTATTACTGTGGCAGCAAGTTTGCGCTGCAAGGCATATCAGAA GTGATGCGTTCAGAAATGGCGCCGTTCGGCGTGCATATGACGACGTTATGCCCCGGCTCTTTCCGCACAGACTGGGCCGG ACGTTCGATGATCCGCACGGAACGGTCGATCGCGGATTACGATTCCCTTTTTGATCCGATACGCGAGGCCCGGCAGGCAG TCAGTGGCAAGCAGCTTGGTGATCCAGAGAAACTCGCTGCAGCCGTCTTGATCCTAGTCGAGACCGATAACCCGCCACCG CAGCTTCTTCTTGGCAGCGACGCTCTCAAGCATGTATCGGCGAGACTCAAGCGTCTTCAAGAAGAAATCGATGCGTGGAC GTCCGTGACGGTATCGACGGACGGCTGA
Upstream 100 bases:
>100_bases TCATAGGATTTGGCAACAACTTCATCGGATCTGCAATCGTTCAGCCGGACGATTAATACTATCGGTCAAACGTCTCTGCA ATCAAGGAAGTTCGCACATC
Downstream 100 bases:
>100_bases CCGGAGAAAGAGGGCGCTCGGACCCTACGGCGCATTTACCCATTTATGATTTTCCTAAATGAGGCCTCAGGCGGGGCCGA AGCCCCGCGATCGTCCTATT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVL INNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISE VMRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG
Sequences:
>Translated_275_residues MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVL INNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISE VMRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG >Mature_274_residues SRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAFDQIPDVVRDTEDKHGPVDVLI NNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIPRFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEV MRSEMAPFGVHMTTLCPGSFRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPPQ LLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=250, Percent_Identity=28.8, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40548397, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI214010158, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI214010156, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI22758144, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI4503817, Length=221, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI223718074, Length=254, Percent_Identity=28.3464566929134, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=27.807486631016, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=30.1587301587302, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI22507405, Length=197, Percent_Identity=31.4720812182741, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI44680136, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI44680133, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI17738292, Length=232, Percent_Identity=28.0172413793103, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=25.7936507936508, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI150247226, Length=237, Percent_Identity=29.535864978903, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI119392083, Length=189, Percent_Identity=31.7460317460317, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI40807363, Length=184, Percent_Identity=29.8913043478261, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI157739938, Length=131, Percent_Identity=33.587786259542, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=26.5560165975104, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4504503, Length=208, Percent_Identity=31.25, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=30.9782608695652, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI50726952, Length=183, Percent_Identity=32.2404371584699, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=216, Percent_Identity=25.9259259259259, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=27.3224043715847, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI210032110, Length=131, Percent_Identity=29.7709923664122, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI31542939, Length=241, Percent_Identity=25.7261410788382, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI210032112, Length=115, Percent_Identity=31.304347826087, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI25282469, Length=138, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7705925, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI87082100, Length=229, Percent_Identity=29.6943231441048, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=30.3191489361702, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=29.1208791208791, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787820, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17507613, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32563809, Length=205, Percent_Identity=26.3414634146341, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71994604, Length=186, Percent_Identity=31.7204301075269, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560150, Length=245, Percent_Identity=28.9795918367347, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17564282, Length=218, Percent_Identity=28.8990825688073, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71997402, Length=200, Percent_Identity=29, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17570069, Length=198, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534660, Length=188, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=28.8065843621399, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=26.5560165975104, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=224, Percent_Identity=29.4642857142857, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17557780, Length=235, Percent_Identity=25.9574468085106, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562904, Length=247, Percent_Identity=25.9109311740891, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193210355, Length=228, Percent_Identity=24.5614035087719, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17538486, Length=245, Percent_Identity=26.9387755102041, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=184, Percent_Identity=27.1739130434783, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32563807, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=24.1803278688525, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559104, Length=245, Percent_Identity=25.3061224489796, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=27.0935960591133, Blast_Score=80, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6320089, Length=189, Percent_Identity=27.5132275132275, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI21358495, Length=271, Percent_Identity=26.1992619926199, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=30.9644670050761, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=32.6315789473684, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI281364892, Length=227, Percent_Identity=25.5506607929515, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24651139, Length=197, Percent_Identity=30.9644670050761, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=28.448275862069, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI23397609, Length=239, Percent_Identity=28.4518828451883, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=28.1632653061224, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24640492, Length=183, Percent_Identity=25.6830601092896, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI281364494, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI221510726, Length=117, Percent_Identity=34.1880341880342, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644339, Length=238, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24663911, Length=191, Percent_Identity=30.3664921465969, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=25.1461988304094, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641232, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648693, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355889, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648944, Length=192, Percent_Identity=25.5208333333333, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=27.3743016759777, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581726, Length=131, Percent_Identity=28.2442748091603, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29765; Mature: 29634
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAF CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DQIPDVVRDTEDKHGPVDVLINNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIP HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH RFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEVMRSEMAPFGVHMTTLCPGS HHHHHCCCEEEEEECCCCEEECCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC FRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCCCC QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG CEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCC >Mature Secondary Structure SRKTFFITGANSGFGLAIATAAAQMGHQVIGTVRSEIARSALAAAVPAIHPVLCDVTAF CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DQIPDVVRDTEDKHGPVDVLINNAGYGHEGVIEESPLEQMRRQFDVNVFGAVAVAKAFIP HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH RFRERRQGFIVNVTSMGGMITMPGIGYYCGSKFALQGISEVMRSEMAPFGVHMTTLCPGS HHHHHCCCEEEEEECCCCEEECCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC FRTDWAGRSMIRTERSIADYDSLFDPIREARQAVSGKQLGDPEKLAAAVLILVETDNPPP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCCCC QLLLGSDALKHVSARLKRLQEEIDAWTSVTVSTDG CEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]