| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636128
Identifier: 221636128
GI number: 221636128
Start: 713687
End: 714430
Strand: Reverse
Name: 221636128
Synonym: trd_A0722
Alternate gene names: NA
Gene position: 714430-713687 (Counterclockwise)
Preceding gene: 221636129
Following gene: 221636127
Centisome position: 77.85
GC content: 73.25
Gene sequence:
>744_bases ATGCTGAAGCTCCCGCTGCTGCGCAGCGATATCGCCTACGTCGCGCCCGAAGTAGGCAGCGACGGGCGACTGGGCGTTTG GCTGGGACGCCGGCACCTGGCCGTCTGGTGGCGGGGGAACGGTCCCTGGCCGGAGGGTCGTTTCCACTGCCCGAATGGGG AGCTGTGGTACCTCGTGGAACGAGTGCAGCCGGTCCGGCCGCTCTTCTGGTGGTGGCGCCGGCAGCCCCCGCCGAGCGCC GTGCGCCTGACGGGAGTGTACGGACCCGCTGAGGGCTGGGGAAAGCGTTTCCGGCTCGTCTTGCCGGTGGAGCCCTGTCC GGAAGCGGCCGAGGAGCTGCGCTTCGATCCTGGCCCGACGGTGGCGGTGCTGCAGGCGGAACCGTTCTACCAGGCGGCCC GGCGTGCGATCCTGGCGCGGGGCGGCAAACAGGCGCAGGGGGTGTTGTTCACGATCGCGCCGGGGTCGGAGGGACCGGTG GCCCACTCGGAGACGCAAGACGGGGCAGGCGAGTTGGTGCCGCTGGCGGGTGAGCTCCTGGTCGCTGAAGCGCTGCTGGT GCCGGCGGCCCTGCCCCGCTGGCTCTGGTGGGCCGGCTACCGCGACGACGTCTACCGGTTGACCCGTCCGCCGATCGGGG GCTGGGCGGCCTGGTGGGGCGACCCGGCGGCAGGGCTGGTCGGCCGCGCCTGGGTCGACGACCGGGGAACGGTGGTCCAG CGGCGCCGGCGCCGCGCTCCATGA
Upstream 100 bases:
>100_bases TGTCGCGGAGCAGGAGGCAGCGTAGCGGCCGGCGGGTGTAGCGGGCGTTGCGTATCCTAGTGGCCGGGGAGTCGGTCAGC GGACGGGGAAGCGGCGGACG
Downstream 100 bases:
>100_bases CATGCTATACTCGATGCGTCGCCTGATATTTAGGTATTCAGGCAACGCGTGGAGGAAATGTCCCCAGTGGCCCGCTCAGT GGCGTGCTGACTGAGACAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MLKLPLLRSDIAYVAPEVGSDGRLGVWLGRRHLAVWWRGNGPWPEGRFHCPNGELWYLVERVQPVRPLFWWWRRQPPPSA VRLTGVYGPAEGWGKRFRLVLPVEPCPEAAEELRFDPGPTVAVLQAEPFYQAARRAILARGGKQAQGVLFTIAPGSEGPV AHSETQDGAGELVPLAGELLVAEALLVPAALPRWLWWAGYRDDVYRLTRPPIGGWAAWWGDPAAGLVGRAWVDDRGTVVQ RRRRRAP
Sequences:
>Translated_247_residues MLKLPLLRSDIAYVAPEVGSDGRLGVWLGRRHLAVWWRGNGPWPEGRFHCPNGELWYLVERVQPVRPLFWWWRRQPPPSA VRLTGVYGPAEGWGKRFRLVLPVEPCPEAAEELRFDPGPTVAVLQAEPFYQAARRAILARGGKQAQGVLFTIAPGSEGPV AHSETQDGAGELVPLAGELLVAEALLVPAALPRWLWWAGYRDDVYRLTRPPIGGWAAWWGDPAAGLVGRAWVDDRGTVVQ RRRRRAP >Mature_247_residues MLKLPLLRSDIAYVAPEVGSDGRLGVWLGRRHLAVWWRGNGPWPEGRFHCPNGELWYLVERVQPVRPLFWWWRRQPPPSA VRLTGVYGPAEGWGKRFRLVLPVEPCPEAAEELRFDPGPTVAVLQAEPFYQAARRAILARGGKQAQGVLFTIAPGSEGPV AHSETQDGAGELVPLAGELLVAEALLVPAALPRWLWWAGYRDDVYRLTRPPIGGWAAWWGDPAAGLVGRAWVDDRGTVVQ RRRRRAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27606; Mature: 27606
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLPLLRSDIAYVAPEVGSDGRLGVWLGRRHLAVWWRGNGPWPEGRFHCPNGELWYLVE CCCCCCHHCCHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCEECCCCCEEEEEE RVQPVRPLFWWWRRQPPPSAVRLTGVYGPAEGWGKRFRLVLPVEPCPEAAEELRFDPGPT CCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCC VAVLQAEPFYQAARRAILARGGKQAQGVLFTIAPGSEGPVAHSETQDGAGELVPLAGELL EEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHH VAEALLVPAALPRWLWWAGYRDDVYRLTRPPIGGWAAWWGDPAAGLVGRAWVDDRGTVVQ HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCCHHEEEEECCCCHHHH RRRRRAP HHHHCCC >Mature Secondary Structure MLKLPLLRSDIAYVAPEVGSDGRLGVWLGRRHLAVWWRGNGPWPEGRFHCPNGELWYLVE CCCCCCHHCCHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCEECCCCCEEEEEE RVQPVRPLFWWWRRQPPPSAVRLTGVYGPAEGWGKRFRLVLPVEPCPEAAEELRFDPGPT CCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCC VAVLQAEPFYQAARRAILARGGKQAQGVLFTIAPGSEGPVAHSETQDGAGELVPLAGELL EEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHH VAEALLVPAALPRWLWWAGYRDDVYRLTRPPIGGWAAWWGDPAAGLVGRAWVDDRGTVVQ HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCCCCHHEEEEECCCCHHHH RRRRRAP HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA