Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is yaiN [C]

Identifier: 221636036

GI number: 221636036

Start: 622800

End: 623078

Strand: Reverse

Name: yaiN [C]

Synonym: trd_A0630

Alternate gene names: 221636036

Gene position: 623078-622800 (Counterclockwise)

Preceding gene: 221636038

Following gene: 221636035

Centisome position: 67.89

GC content: 63.08

Gene sequence:

>279_bases
ATGACCTCAGTCGCGCAGCTGGACGAAGTCACACGTCGCGAACTGGTCGAGCGCCTGCGTCGCATCGAAGGACAAGCGCG
GGGGATCGCTCGCATGATCGAGGAAGGGCGGGATTGCGTCGATATCGTGCAACAACTGGCGGCGATGCGAGCAGCGACCG
ATAGCTTGTGCGCCGAGCTCGTGCAAGCCATGTTGGAACGCTGCTTTCTCGACGGAACACCACCTGCGCCGCAGCAACTG
GCGCGCGCTCTCAAAGCGGTGATCCGCGGTGGACGATGA

Upstream 100 bases:

>100_bases
GAGTGGGTGAGGCAAGACATCGCTGCGAGGTCTTGACGCTGGTTCGACATTCGCGTTACAGTGTAGCCGTACCCCGGTTG
AGTATCTCGGAGGAGGAGCG

Downstream 100 bases:

>100_bases
GGGGGACGCCGATGGCGCGCTATGGGTTCGTCATCGACCAGCGCAAATGCATCGGCTGTCATGCCTGCACGGTCGCTTGT
AAATCGGAGAACCTCGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MTSVAQLDEVTRRELVERLRRIEGQARGIARMIEEGRDCVDIVQQLAAMRAATDSLCAELVQAMLERCFLDGTPPAPQQL
ARALKAVIRGGR

Sequences:

>Translated_92_residues
MTSVAQLDEVTRRELVERLRRIEGQARGIARMIEEGRDCVDIVQQLAAMRAATDSLCAELVQAMLERCFLDGTPPAPQQL
ARALKAVIRGGR
>Mature_91_residues
TSVAQLDEVTRRELVERLRRIEGQARGIARMIEEGRDCVDIVQQLAAMRAATDSLCAELVQAMLERCFLDGTPPAPQQLA
RALKAVIRGGR

Specific function: Unknown

COG id: COG1937

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10191; Mature: 10060

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVAQLDEVTRRELVERLRRIEGQARGIARMIEEGRDCVDIVQQLAAMRAATDSLCAEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VQAMLERCFLDGTPPAPQQLARALKAVIRGGR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSVAQLDEVTRRELVERLRRIEGQARGIARMIEEGRDCVDIVQQLAAMRAATDSLCAEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VQAMLERCFLDGTPPAPQQLARALKAVIRGGR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA