Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221635878

Identifier: 221635878

GI number: 221635878

Start: 459740

End: 460018

Strand: Reverse

Name: 221635878

Synonym: trd_A0472

Alternate gene names: NA

Gene position: 460018-459740 (Counterclockwise)

Preceding gene: 221635879

Following gene: 221635877

Centisome position: 50.13

GC content: 70.61

Gene sequence:

>279_bases
GTGGGCCGACCAGCTGTCCAGCACGAGCGACCTCCGCTGATCGCTCGACTGGTAGGTCGTTCCCTCTGGCCACTCGAGCC
GCGCCGCATCGCTCGTCCACCAGCGAACTCCGGACACGGCGCCACTCGACGACGCGGGCCGCGCGCCCGCCCTGTCCGGT
GTTCCGGGCGTTCGGCTCCCGGCATCCCGCGCGCGATGCTCGACACGGCCGATGGGGGCTGCTATCATACTGTCGGACAG
CTGCCGACCTCACGAGCCTGCAACGGGAGCCAGGTGTGA

Upstream 100 bases:

>100_bases
CCCGCCTGGCCCGCCACGCCCTCTTCGACCAGACACGCCGTCTCGCGCACCTCCTGCGGGCACCAGCCGAGCCGTGCCTC
ACTGTCCCGCTCGAGATCTG

Downstream 100 bases:

>100_bases
CGACGGTCGAAGTCCGCAAACTCCCAACTCAGGTCGCGGTCCATCTGGGTCGCGAGCTGATCGCGCTCGCCGGCGAACCA
GGCGCCGTCTTGCCCTCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MGRPAVQHERPPLIARLVGRSLWPLEPRRIARPPANSGHGATRRRGPRARPVRCSGRSAPGIPRAMLDTADGGCYHTVGQ
LPTSRACNGSQV

Sequences:

>Translated_92_residues
MGRPAVQHERPPLIARLVGRSLWPLEPRRIARPPANSGHGATRRRGPRARPVRCSGRSAPGIPRAMLDTADGGCYHTVGQ
LPTSRACNGSQV
>Mature_91_residues
GRPAVQHERPPLIARLVGRSLWPLEPRRIARPPANSGHGATRRRGPRARPVRCSGRSAPGIPRAMLDTADGGCYHTVGQL
PTSRACNGSQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9896; Mature: 9764

Theoretical pI: Translated: 12.39; Mature: 12.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPAVQHERPPLIARLVGRSLWPLEPRRIARPPANSGHGATRRRGPRARPVRCSGRSAP
CCCCCCCCCCCCHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
GIPRAMLDTADGGCYHTVGQLPTSRACNGSQV
CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GRPAVQHERPPLIARLVGRSLWPLEPRRIARPPANSGHGATRRRGPRARPVRCSGRSAP
CCCCCCCCCCCHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
GIPRAMLDTADGGCYHTVGQLPTSRACNGSQV
CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA