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The map label for this gene is 221635879

Identifier: 221635879

GI number: 221635879

Start: 459979

End: 461292

Strand: Reverse

Name: 221635879

Synonym: trd_A0473

Alternate gene names: NA

Gene position: 461292-459979 (Counterclockwise)

Preceding gene: 221635880

Following gene: 221635878

Centisome position: 50.26

GC content: 71.46

Gene sequence:

>1314_bases
ATGGACTCGTTCGAGACGCTGCTCGTCGCCAGTCTCCTTCACGACCTCGGCAAGCTGTGGCAGCGAACCGGTCAGCGCCA
CAGCGACCGCTACGCCGCGTACGGCCCGAGCGACTACGGGCCAAACGGTGCCCACGCCAAGTGGAGCGCCGACGCCATCG
AAAGGTGGCTCCCGCAGTGGCGCGCTGCAGCGGACGCCATCCTCCGCCACCACCAGCCGGCCGACCGGTTCGCTCGCCTC
GTCGCCCTGGCCGACCGGCTCTCGGCTGCCGAGCGCGACGATGCCGAGACTGACCAGCCTCCGGCACCGCCCGGCGGAGG
GGCGCTCTGGGCTGCCACGCGCCTCGGGCAACGCCAGTTGCGCAGTATCTTCACCCGCCTGCAGCTCGCCGGTGCCCCCG
CCCCCGCACCGGCCTACTGGCCGCTCGCGCCGCTCGCGCTCGCGCCGGAAGGACTCTTCCCCAATGCGTCACCAGTCGAA
GAGGTCAGCGAGCGGCAGGGCTACGAAGCACTCTGGCAGCGTCTCGTCGAAGATCTCGAGGCCATCCCACCGACGCTCGA
CTTCGACGCGCGCCTCACCACCGTGCTCCATCTCCTCCAGCGCTACACCTGGTGCGTCCCCTCGGCGTACTACCGGCAGA
ACGTCGCTGATATCTCGCTCCACGACCATCTCCGCACCACCGCAGCGATCGCCGCTGCGCTCGACCGCTCCGGTCTCGAC
GACGAAGCGCTCGCGGCACTGCTCGCGCACCGATCGCCGGACTGGGACACCCCGCGGCTGGCGCTGCTCGCAGCCGACGT
CACCGGTATCCAGCGCTTCCTCTACACGCTCACCGCTGCACGGGCCGCCCGCAGCCTGCGCGGGCGCTCCTTCTTCCTCC
AGCTCGTCACCGAGGCGGTCGGTCGCTGGCTCCTGCGCCGCCTCAACCTCCCCCTCGCCAACCTGCTCTACGCTGGCGGC
GGCCGCTGCTACCTGCTCACCCAGCTGCCGAGCGACGACCAGCTCGCCGCGCTCCGCCGCGACCTCGACCGGATCCTCCT
CGCCACGACCGACGGCGAACTGTACCTCGCGCTCGCCTGCCGCCCGCTCGCCTGTGCCGATCTCGCTGAACCGGAGCGCT
TCCGCGCCGCCTGGGAAGCCCGGAAGGGACGACCGCTCCCGCTCGTTGGGACAACCCGCCTGGCCCGCCACGCCCTCTTC
GACCAGACACGCCGTCTCGCGCACCTCCTGCGGGCACCAGCCGAGCCGTGCCTCACTGTCCCGCTCGAGATCTGGTGGGC
CGACCAGCTGTCCAGCACGAGCGACCTCCGCTGA

Upstream 100 bases:

>100_bases
GCGCCCGCGAGCGACTCCCAGCTGGTCGGTCCGCGCGTGCACCGCTTGACGAGCGACGCATGATCTCGTAGGCTCATGCA
GACCATACGGTGACCGACTG

Downstream 100 bases:

>100_bases
TCGCTCGACTGGTAGGTCGTTCCCTCTGGCCACTCGAGCCGCGCCGCATCGCTCGTCCACCAGCGAACTCCGGACACGGC
GCCACTCGACGACGCGGGCC

Product: crispr-associated protein, Csm1 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MDSFETLLVASLLHDLGKLWQRTGQRHSDRYAAYGPSDYGPNGAHAKWSADAIERWLPQWRAAADAILRHHQPADRFARL
VALADRLSAAERDDAETDQPPAPPGGGALWAATRLGQRQLRSIFTRLQLAGAPAPAPAYWPLAPLALAPEGLFPNASPVE
EVSERQGYEALWQRLVEDLEAIPPTLDFDARLTTVLHLLQRYTWCVPSAYYRQNVADISLHDHLRTTAAIAAALDRSGLD
DEALAALLAHRSPDWDTPRLALLAADVTGIQRFLYTLTAARAARSLRGRSFFLQLVTEAVGRWLLRRLNLPLANLLYAGG
GRCYLLTQLPSDDQLAALRRDLDRILLATTDGELYLALACRPLACADLAEPERFRAAWEARKGRPLPLVGTTRLARHALF
DQTRRLAHLLRAPAEPCLTVPLEIWWADQLSSTSDLR

Sequences:

>Translated_437_residues
MDSFETLLVASLLHDLGKLWQRTGQRHSDRYAAYGPSDYGPNGAHAKWSADAIERWLPQWRAAADAILRHHQPADRFARL
VALADRLSAAERDDAETDQPPAPPGGGALWAATRLGQRQLRSIFTRLQLAGAPAPAPAYWPLAPLALAPEGLFPNASPVE
EVSERQGYEALWQRLVEDLEAIPPTLDFDARLTTVLHLLQRYTWCVPSAYYRQNVADISLHDHLRTTAAIAAALDRSGLD
DEALAALLAHRSPDWDTPRLALLAADVTGIQRFLYTLTAARAARSLRGRSFFLQLVTEAVGRWLLRRLNLPLANLLYAGG
GRCYLLTQLPSDDQLAALRRDLDRILLATTDGELYLALACRPLACADLAEPERFRAAWEARKGRPLPLVGTTRLARHALF
DQTRRLAHLLRAPAEPCLTVPLEIWWADQLSSTSDLR
>Mature_437_residues
MDSFETLLVASLLHDLGKLWQRTGQRHSDRYAAYGPSDYGPNGAHAKWSADAIERWLPQWRAAADAILRHHQPADRFARL
VALADRLSAAERDDAETDQPPAPPGGGALWAATRLGQRQLRSIFTRLQLAGAPAPAPAYWPLAPLALAPEGLFPNASPVE
EVSERQGYEALWQRLVEDLEAIPPTLDFDARLTTVLHLLQRYTWCVPSAYYRQNVADISLHDHLRTTAAIAAALDRSGLD
DEALAALLAHRSPDWDTPRLALLAADVTGIQRFLYTLTAARAARSLRGRSFFLQLVTEAVGRWLLRRLNLPLANLLYAGG
GRCYLLTQLPSDDQLAALRRDLDRILLATTDGELYLALACRPLACADLAEPERFRAAWEARKGRPLPLVGTTRLARHALF
DQTRRLAHLLRAPAEPCLTVPLEIWWADQLSSTSDLR

Specific function: Unknown

COG id: COG1353

COG function: function code R; Predicted hydrolase of the HD superfamily (permuted catalytic motifs)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013408
- InterPro:   IPR000160 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48540; Mature: 48540

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFETLLVASLLHDLGKLWQRTGQRHSDRYAAYGPSDYGPNGAHAKWSADAIERWLPQW
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RAAADAILRHHQPADRFARLVALADRLSAAERDDAETDQPPAPPGGGALWAATRLGQRQL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
RSIFTRLQLAGAPAPAPAYWPLAPLALAPEGLFPNASPVEEVSERQGYEALWQRLVEDLE
HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
AIPPTLDFDARLTTVLHLLQRYTWCVPSAYYRQNVADISLHDHLRTTAAIAAALDRSGLD
HCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DEALAALLAHRSPDWDTPRLALLAADVTGIQRFLYTLTAARAARSLRGRSFFLQLVTEAV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRWLLRRLNLPLANLLYAGGGRCYLLTQLPSDDQLAALRRDLDRILLATTDGELYLALAC
HHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEECCCCEEEEEEC
RPLACADLAEPERFRAAWEARKGRPLPLVGTTRLARHALFDQTRRLAHLLRAPAEPCLTV
CCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
PLEIWWADQLSSTSDLR
CHHEEEHHHCCCCCCCC
>Mature Secondary Structure
MDSFETLLVASLLHDLGKLWQRTGQRHSDRYAAYGPSDYGPNGAHAKWSADAIERWLPQW
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RAAADAILRHHQPADRFARLVALADRLSAAERDDAETDQPPAPPGGGALWAATRLGQRQL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
RSIFTRLQLAGAPAPAPAYWPLAPLALAPEGLFPNASPVEEVSERQGYEALWQRLVEDLE
HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
AIPPTLDFDARLTTVLHLLQRYTWCVPSAYYRQNVADISLHDHLRTTAAIAAALDRSGLD
HCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DEALAALLAHRSPDWDTPRLALLAADVTGIQRFLYTLTAARAARSLRGRSFFLQLVTEAV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRWLLRRLNLPLANLLYAGGGRCYLLTQLPSDDQLAALRRDLDRILLATTDGELYLALAC
HHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHEEEEECCCCEEEEEEC
RPLACADLAEPERFRAAWEARKGRPLPLVGTTRLARHALFDQTRRLAHLLRAPAEPCLTV
CCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
PLEIWWADQLSSTSDLR
CHHEEEHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]