| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221635679
Identifier: 221635679
GI number: 221635679
Start: 256639
End: 257022
Strand: Reverse
Name: 221635679
Synonym: trd_A0273
Alternate gene names: NA
Gene position: 257022-256639 (Counterclockwise)
Preceding gene: 221635680
Following gene: 221635678
Centisome position: 28.01
GC content: 67.45
Gene sequence:
>384_bases ATGACACCGATCGAGGTCACGCCGCAGCCACCGGACATCGATCAGCGCGCGCTCCGCGTCTTCCTCAAAGCCATCGAGCT CGTCGGCGGGCCACGCCAGCTGGTCGAGTTGCGACGGCTCACCTGGTTACCCAGTCTGATGGAAGCAGCCTACGCGGTAG TCCTCGCCGAAGAGCATCACTGGCCAGCCGAAGAGATCGCCCGGTTCCTCGGTGTCTCCAGCGCGGCAGCGCGCCACCTC CTGCGCGCTCCCGAGGCAGCCGTGCTGGAGCGCCTCCGCGGCGAGGAACCCAGCGAGCACAACGTCCACATCGCCGGTGG ACTGGCCAAACTCGCCCTGGAGGCTCTCCAGCGCGAGGAGGAAAGCGGAACGCACCAGTCGTGA
Upstream 100 bases:
>100_bases ACCTACTCGAGATCACCCCAGAAGGACTGGTGCGGATCGGACCGCGGCTGAGCGACCTCGCACGCGGTGCAGCTGTCAGC ACAGGAGAGGAGGAGGTGGA
Downstream 100 bases:
>100_bases TCGAGCCAGCTCGGGAACGGGCAGCACAGCGGCGACGCCTGCGGGGCGGCCCCGCTGATCACCCTTCCCATCGCCTCGCT TCCTGACGAGTGGGTTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MTPIEVTPQPPDIDQRALRVFLKAIELVGGPRQLVELRRLTWLPSLMEAAYAVVLAEEHHWPAEEIARFLGVSSAAARHL LRAPEAAVLERLRGEEPSEHNVHIAGGLAKLALEALQREEESGTHQS
Sequences:
>Translated_127_residues MTPIEVTPQPPDIDQRALRVFLKAIELVGGPRQLVELRRLTWLPSLMEAAYAVVLAEEHHWPAEEIARFLGVSSAAARHL LRAPEAAVLERLRGEEPSEHNVHIAGGLAKLALEALQREEESGTHQS >Mature_126_residues TPIEVTPQPPDIDQRALRVFLKAIELVGGPRQLVELRRLTWLPSLMEAAYAVVLAEEHHWPAEEIARFLGVSSAAARHLL RAPEAAVLERLRGEEPSEHNVHIAGGLAKLALEALQREEESGTHQS
Specific function: Unknown
COG id: COG1318
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14062; Mature: 13931
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPIEVTPQPPDIDQRALRVFLKAIELVGGPRQLVELRRLTWLPSLMEAAYAVVLAEEHH CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC WPAEEIARFLGVSSAAARHLLRAPEAAVLERLRGEEPSEHNVHIAGGLAKLALEALQREE CCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH ESGTHQS HCCCCCC >Mature Secondary Structure TPIEVTPQPPDIDQRALRVFLKAIELVGGPRQLVELRRLTWLPSLMEAAYAVVLAEEHH CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC WPAEEIARFLGVSSAAARHLLRAPEAAVLERLRGEEPSEHNVHIAGGLAKLALEALQREE CCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH ESGTHQS HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA