| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221635630
Identifier: 221635630
GI number: 221635630
Start: 212911
End: 213705
Strand: Reverse
Name: 221635630
Synonym: trd_A0224
Alternate gene names: NA
Gene position: 213705-212911 (Counterclockwise)
Preceding gene: 221635631
Following gene: 221635613
Centisome position: 23.29
GC content: 66.29
Gene sequence:
>795_bases ATGGAGCGTCGCCGTTCCCCAGTACAGTTGATCGGCTTCGGTTGCCTCGGTCTCCTGCTCCTCGTCCTCGCAGTGGGCGG CGGAGGTCTCATCGGCTATCTCGCCTTTCAGTACGGTCTCCTCAGCACCGCGACACCGACCCCGCAACGTGGGCAGGGAC AGATCATCACCCCGCCAGCAGACAGCTCGGCGAGCACGCCGACCATGCAGGCCGCTCCGCGCGAGACACCCACCGCTGCA CCGGTCGCGCCGCGGGCCGTGACGCCCACTCCGCAGCCGGAACCCACACCCGGCCCAGTCGTCATCCCGGACTGGCCGAC CTACGAGGACCCCGGTTACATCCGCTTCCAGCACCCGCCGCACTGGCTCGTCATCACCACACCGGAGGCTCCAGAATACA ATCTCCGCTCCTGTCACTGCTACTGGATCGTGATGAGCGAACTGATGGTCCAGAACAGTCCGAGCCCCGAGGTGGTCGCT GACTGGTTCAACACGAAGAGCCTCGACGGTATCCCACCCGGGGGGATCTGGATGGAGATCCTGCGCCTCGACTCCGAGTA CGCACCCCGCCCCGACTTCCTCGACGGCACGCCTCAGGGCTCGCTCGTCATCGGCAACCAGTACGAGGCCGAGGTCTACC AGCTCGACCCAAATGGTCGCATCCGCGCCTATCACTATCGGGACGGCCAGGGGCGTCCCTGGGTGATCGTTGTCCGCGCA CCGGACGGCTTCGACCGCGCCAACCCACAAGTCCAACGCTTGACCGGCGTGCTCGCGACGATCGACCACCGCTGA
Upstream 100 bases:
>100_bases TATTTCGGCACGCCGTTCGAGCAAGATATGGAGCACTTGGCCATGCTCGGCCAGATCGTTGCCAGCATCCAGCACCCGAG CTGAGCGAGGAGAGCACGCC
Downstream 100 bases:
>100_bases GCCAGGGGCTACCCCAACCGTCTGTCGCGCACCCTTCCCGATCGAACACCCGGTCACCCCTCAGGGGCCCGAGGCTGCGG TGACGCGCTGAGATCAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MERRRSPVQLIGFGCLGLLLLVLAVGGGGLIGYLAFQYGLLSTATPTPQRGQGQIITPPADSSASTPTMQAAPRETPTAA PVAPRAVTPTPQPEPTPGPVVIPDWPTYEDPGYIRFQHPPHWLVITTPEAPEYNLRSCHCYWIVMSELMVQNSPSPEVVA DWFNTKSLDGIPPGGIWMEILRLDSEYAPRPDFLDGTPQGSLVIGNQYEAEVYQLDPNGRIRAYHYRDGQGRPWVIVVRA PDGFDRANPQVQRLTGVLATIDHR
Sequences:
>Translated_264_residues MERRRSPVQLIGFGCLGLLLLVLAVGGGGLIGYLAFQYGLLSTATPTPQRGQGQIITPPADSSASTPTMQAAPRETPTAA PVAPRAVTPTPQPEPTPGPVVIPDWPTYEDPGYIRFQHPPHWLVITTPEAPEYNLRSCHCYWIVMSELMVQNSPSPEVVA DWFNTKSLDGIPPGGIWMEILRLDSEYAPRPDFLDGTPQGSLVIGNQYEAEVYQLDPNGRIRAYHYRDGQGRPWVIVVRA PDGFDRANPQVQRLTGVLATIDHR >Mature_264_residues MERRRSPVQLIGFGCLGLLLLVLAVGGGGLIGYLAFQYGLLSTATPTPQRGQGQIITPPADSSASTPTMQAAPRETPTAA PVAPRAVTPTPQPEPTPGPVVIPDWPTYEDPGYIRFQHPPHWLVITTPEAPEYNLRSCHCYWIVMSELMVQNSPSPEVVA DWFNTKSLDGIPPGGIWMEILRLDSEYAPRPDFLDGTPQGSLVIGNQYEAEVYQLDPNGRIRAYHYRDGQGRPWVIVVRA PDGFDRANPQVQRLTGVLATIDHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29013; Mature: 29013
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRRSPVQLIGFGCLGLLLLVLAVGGGGLIGYLAFQYGLLSTATPTPQRGQGQIITPPA CCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC DSSASTPTMQAAPRETPTAAPVAPRAVTPTPQPEPTPGPVVIPDWPTYEDPGYIRFQHPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCC HWLVITTPEAPEYNLRSCHCYWIVMSELMVQNSPSPEVVADWFNTKSLDGIPPGGIWMEI CEEEEECCCCCCCCCCEEEEHEEEHHHHHHCCCCCCCCEEHHHCCCCCCCCCCCHHHHHH LRLDSEYAPRPDFLDGTPQGSLVIGNQYEAEVYQLDPNGRIRAYHYRDGQGRPWVIVVRA HHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEC PDGFDRANPQVQRLTGVLATIDHR CCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MERRRSPVQLIGFGCLGLLLLVLAVGGGGLIGYLAFQYGLLSTATPTPQRGQGQIITPPA CCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC DSSASTPTMQAAPRETPTAAPVAPRAVTPTPQPEPTPGPVVIPDWPTYEDPGYIRFQHPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCC HWLVITTPEAPEYNLRSCHCYWIVMSELMVQNSPSPEVVADWFNTKSLDGIPPGGIWMEI CEEEEECCCCCCCCCCEEEEHEEEHHHHHHCCCCCCCCEEHHHCCCCCCCCCCCHHHHHH LRLDSEYAPRPDFLDGTPQGSLVIGNQYEAEVYQLDPNGRIRAYHYRDGQGRPWVIVVRA HHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEC PDGFDRANPQVQRLTGVLATIDHR CCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA