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The map label for this gene is pomA [H]

Identifier: 221635438

GI number: 221635438

Start: 27943

End: 28746

Strand: Reverse

Name: pomA [H]

Synonym: trd_A0032

Alternate gene names: 221635438

Gene position: 28746-27943 (Counterclockwise)

Preceding gene: 221635439

Following gene: 221635437

Centisome position: 3.13

GC content: 62.44

Gene sequence:

>804_bases
ATGGATCTCGCCACCATACTGGGGATCGTGCTCGGTTTCGGCGCGCTCATTCTCGCCTTCGTCATGGAAGGCGGACATCT
CTCGTCCCTGATCGGTATCACTGCCTACATGATCATCTTCGGCGGGACGTTCGGTGCGACGCTCACGAGTTACGGTCTCA
AGGACATGCTCGGCCTTCCCAAGCTCATCATGAAGGCGATCAAGACCCCGCCCGACCGTCGCGCTGTACTCGTCGAAGAG
ATCGTCAAGCTGGCCGAGATCGCCCGCCGTGACGGCCTTCTCGCCCTCGAGAACCATCCGATCGAAGATCCCTTCCTGAA
GAAAGGGATCATGCTGGTCGTCGACGGCACCGACGCTGAGCTGACGGAGCAGATCCTCTGGGCCGATGTCGAAGCGATGG
AGCAGCGTCACGCTCGTGGGTACGGCATCTTCCAGACGATGGGCGGTTTCGCACCCACCATGGGCATCATCGGAACGGTC
ATGGGTCTGGTGCACGTGTTGAGTTCGCTCAAAGATCCAGAATCGCTCGGCCCGGCGATCGCAGTCGCTTTCCTGGCCAC
GCTCTATGGTGTGGCGACCGCCAACTTGCTCTGGCTTCCTCTCCACAACAAGCTCAAGCTGCGCAGCAAGGAAGAAGTGG
CCGAGCGGCAGCTCATCATCGAGGGTATCCTGGGTATCCAGGCCGGCGAGAACCCGCGCATGCTCCGCGAAAAGCTCCTC
GTGCACCTTCCGCCGCAAGCGCGCGCGACCGAGCCGAAGGCCGCTCCCGCCGGTGCTCGGGCGATGGCGCCGGGTGGGGA
GTGA

Upstream 100 bases:

>100_bases
GCTGGCCTATCGACGGGGGCTCGGCGGGCAACCGGACGCGGTGCGTGGCCTACTCCCTCGCGCTGAGCACGACGATTGAG
GGACGGGAGGAGCAGCCAGG

Downstream 100 bases:

>100_bases
TCGGCCATGGCTCGACGCCAGCGGCATCATGAAGGCGAGCACGAGAACCTGGAGCGCTGGCTCATCACCTATGCCGATCT
CATCACGCTGTTGCTCATCT

Product: chemotaxis protein PomA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MDLATILGIVLGFGALILAFVMEGGHLSSLIGITAYMIIFGGTFGATLTSYGLKDMLGLPKLIMKAIKTPPDRRAVLVEE
IVKLAEIARRDGLLALENHPIEDPFLKKGIMLVVDGTDAELTEQILWADVEAMEQRHARGYGIFQTMGGFAPTMGIIGTV
MGLVHVLSSLKDPESLGPAIAVAFLATLYGVATANLLWLPLHNKLKLRSKEEVAERQLIIEGILGIQAGENPRMLREKLL
VHLPPQARATEPKAAPAGARAMAPGGE

Sequences:

>Translated_267_residues
MDLATILGIVLGFGALILAFVMEGGHLSSLIGITAYMIIFGGTFGATLTSYGLKDMLGLPKLIMKAIKTPPDRRAVLVEE
IVKLAEIARRDGLLALENHPIEDPFLKKGIMLVVDGTDAELTEQILWADVEAMEQRHARGYGIFQTMGGFAPTMGIIGTV
MGLVHVLSSLKDPESLGPAIAVAFLATLYGVATANLLWLPLHNKLKLRSKEEVAERQLIIEGILGIQAGENPRMLREKLL
VHLPPQARATEPKAAPAGARAMAPGGE
>Mature_267_residues
MDLATILGIVLGFGALILAFVMEGGHLSSLIGITAYMIIFGGTFGATLTSYGLKDMLGLPKLIMKAIKTPPDRRAVLVEE
IVKLAEIARRDGLLALENHPIEDPFLKKGIMLVVDGTDAELTEQILWADVEAMEQRHARGYGIFQTMGGFAPTMGIIGTV
MGLVHVLSSLKDPESLGPAIAVAFLATLYGVATANLLWLPLHNKLKLRSKEEVAERQLIIEGILGIQAGENPRMLREKLL
VHLPPQARATEPKAAPAGARAMAPGGE

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 28602; Mature: 28602

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLATILGIVLGFGALILAFVMEGGHLSSLIGITAYMIIFGGTFGATLTSYGLKDMLGLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHH
KLIMKAIKTPPDRRAVLVEEIVKLAEIARRDGLLALENHPIEDPFLKKGIMLVVDGTDAE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCEEEEECCCHH
LTEQILWADVEAMEQRHARGYGIFQTMGGFAPTMGIIGTVMGLVHVLSSLKDPESLGPAI
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AVAFLATLYGVATANLLWLPLHNKLKLRSKEEVAERQLIIEGILGIQAGENPRMLREKLL
HHHHHHHHHHHHHHCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VHLPPQARATEPKAAPAGARAMAPGGE
HCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLATILGIVLGFGALILAFVMEGGHLSSLIGITAYMIIFGGTFGATLTSYGLKDMLGLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHH
KLIMKAIKTPPDRRAVLVEEIVKLAEIARRDGLLALENHPIEDPFLKKGIMLVVDGTDAE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCEEEEECCCHH
LTEQILWADVEAMEQRHARGYGIFQTMGGFAPTMGIIGTVMGLVHVLSSLKDPESLGPAI
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AVAFLATLYGVATANLLWLPLHNKLKLRSKEEVAERQLIIEGILGIQAGENPRMLREKLL
HHHHHHHHHHHHHHCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VHLPPQARATEPKAAPAGARAMAPGGE
HCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]