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The map label for this gene is ddpA [H]

Identifier: 221633835

GI number: 221633835

Start: 1872520

End: 1874334

Strand: Reverse

Name: ddpA [H]

Synonym: trd_1862

Alternate gene names: 221633835

Gene position: 1874334-1872520 (Counterclockwise)

Preceding gene: 221633836

Following gene: 221633834

Centisome position: 93.58

GC content: 66.06

Gene sequence:

>1815_bases
GTGCAGCGGCGACTCGCTCGCTTGACGCCACTCGTTCTCGAGGATCACACTTCGATGGGTAATCGCAACGAGGCGACGAG
GAGGAGACAGACCATGGCCGAACAGCGAGCAGAGAGGTGGCTGAATCGCGCCATGCAGCGGCGCCGTTTTCTCCGGCTCA
CCGCCCTCGGGGCGGGAATCGCCGGCCTGGGTCTCCTGACGGCCTGCGCACGCCAGGAGGCGACACCGACTCCGGCGCCA
GCCGCGACGCCACCCGGACCGGCCCCGGCGCAGACGCCAGCTGCTGCCGCCTCCCCGGCACCAGCCGGCAGCGGCACCTT
CGTCATCGCACGTCTCACCGATACGATCACGCTCGACCCCTCGCGCCAGTACGAGCTCACCTCACCGATCGTCATGGGCG
CGTGTTACGAGCGCTTGGTCACCATCCAGCCACCGGACATCCGCACTGTCCAGTTCCAGCTGGCCGAGAAGGTCGATATC
AGCCAGGACGTCACGACCTATACCTTCACCCTGCGCGCAGGTCCCCGCTTCGCGTCCGGGAATCCCGTGACATCGGCCGA
CGTCGTCTTCAGCTTCAACCGGTTGCGCGAGCTGAAGGACAACCCCTCCTGGCTGGCTGACATCATCCAGACGATGGAAA
CGCCCGACGAGCGCACCGTCCGCATCACCTTGACCGAACCCAACGCCGCGTTCTTGGCTATGCTCGTCTCGCCGAACTTC
TCCGTCCTCGACTCCCAGGTCGTCAAGCAGCAGGGCGGAACGGACCAGCCGGGAGCGGACAAGACCGACAAGGCCACCGA
ATGGCTCAACCAGAACTCGGCTGGCTCCGGTCCCTTCGTCCTCAAGGGCTGGGTCAAAGAACAAGAGATCGTCATGGAGC
GCAACCCCAACTACTGGGGTTCACCAGCTCCGCTCGAGCGCGTCATCATCCGGCACATACCCGATCCCACCGCCCAGCGA
CAGTTGCTCGAGCGCGGCGACGTCGACGCTGCCCACAATCTGGACGCTGACCTCATTGCCGAGGTCGAGCGCGCGGGAAC
TGCCCAGATCGTACGCGGTGACACCCTCGACACCGAATACTTCGCCATGCACACCAGTCCGGCAGTCGGCAAGGAGCTGG
CCGATCGGCGCGTGCGGCAAGCGATCGCCTACGCCATCGACTACGACGGGATCATCCAGCAACTCCTGCGCGGTGCAGCG
GTCCGCCCGCCCTCGGTGATCCCCAGTGGTCTCCTGGGAGTGGCGGAAGCCGAGGACGCTCGCTATCGGACGGACCCCGA
GCGGGCCAAGCAGCTCCTCGCCGAAGCTGGCTTGGCCAACGGCTTCGAGCTCACGCTCACCTTCAGCAGTGGCGGGACCG
AGGTCGGTGGCGTGTCCTCCGAAGTCCTCGCTAGCAAGATCGCCGATGACCTGCGCAAGGTCGGGATCCGCGTCACGCTC
GACCCCCGTGCACCGGACGTGCGTCTGGCGGATTACCGAGCCGGCAAGCTGCAATGCACGATCTCCGGCTGGACTCCGGA
CTTCCTCGACCCGCACGGCTGGGCCATCCCCTTCGGTGTCCCGGGCGAGGCCGCAGCCAAGCGCGTGGCTTACGACAATC
CGCAAGTCGCGGATCTGTTCCAGCGCGCCGCCAAGACGGCCGACCCGCAAGAACGAGCTCGCCTCTATGCCGAGGGACAG
CGGCTCCTCAACCAGGACGCGCCCTTCCTGTGCCTCTACCAACCCAAGGCCCAGATCGCGGTCGGGAAGAACGTGCAGGG
ATACGTGTTCGATCCGGTCATCGGGGTCGATCTGAGCAAGGTCCGCAAGAGCTAG

Upstream 100 bases:

>100_bases
GTGCTCGCTCGGACCGGCTCAACTCCCGCCACATGGCCGAACCGCGTGCTCCTGACCGCGGCGCGCACGCGGGCTGGAGG
CCCCAGCAGCATAGCCATGA

Downstream 100 bases:

>100_bases
GATCGGCACCCTTCAGCCGCCCGAGGAGCCTGGACCATGTTCGGCCGTTTCGTCCTGCGGCGCCTGCTCGTCACGATGCC
GCTCCTCGTCGGGGTGACTC

Product: putative dipeptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MQRRLARLTPLVLEDHTSMGNRNEATRRRQTMAEQRAERWLNRAMQRRRFLRLTALGAGIAGLGLLTACARQEATPTPAP
AATPPGPAPAQTPAAAASPAPAGSGTFVIARLTDTITLDPSRQYELTSPIVMGACYERLVTIQPPDIRTVQFQLAEKVDI
SQDVTTYTFTLRAGPRFASGNPVTSADVVFSFNRLRELKDNPSWLADIIQTMETPDERTVRITLTEPNAAFLAMLVSPNF
SVLDSQVVKQQGGTDQPGADKTDKATEWLNQNSAGSGPFVLKGWVKEQEIVMERNPNYWGSPAPLERVIIRHIPDPTAQR
QLLERGDVDAAHNLDADLIAEVERAGTAQIVRGDTLDTEYFAMHTSPAVGKELADRRVRQAIAYAIDYDGIIQQLLRGAA
VRPPSVIPSGLLGVAEAEDARYRTDPERAKQLLAEAGLANGFELTLTFSSGGTEVGGVSSEVLASKIADDLRKVGIRVTL
DPRAPDVRLADYRAGKLQCTISGWTPDFLDPHGWAIPFGVPGEAAAKRVAYDNPQVADLFQRAAKTADPQERARLYAEGQ
RLLNQDAPFLCLYQPKAQIAVGKNVQGYVFDPVIGVDLSKVRKS

Sequences:

>Translated_604_residues
MQRRLARLTPLVLEDHTSMGNRNEATRRRQTMAEQRAERWLNRAMQRRRFLRLTALGAGIAGLGLLTACARQEATPTPAP
AATPPGPAPAQTPAAAASPAPAGSGTFVIARLTDTITLDPSRQYELTSPIVMGACYERLVTIQPPDIRTVQFQLAEKVDI
SQDVTTYTFTLRAGPRFASGNPVTSADVVFSFNRLRELKDNPSWLADIIQTMETPDERTVRITLTEPNAAFLAMLVSPNF
SVLDSQVVKQQGGTDQPGADKTDKATEWLNQNSAGSGPFVLKGWVKEQEIVMERNPNYWGSPAPLERVIIRHIPDPTAQR
QLLERGDVDAAHNLDADLIAEVERAGTAQIVRGDTLDTEYFAMHTSPAVGKELADRRVRQAIAYAIDYDGIIQQLLRGAA
VRPPSVIPSGLLGVAEAEDARYRTDPERAKQLLAEAGLANGFELTLTFSSGGTEVGGVSSEVLASKIADDLRKVGIRVTL
DPRAPDVRLADYRAGKLQCTISGWTPDFLDPHGWAIPFGVPGEAAAKRVAYDNPQVADLFQRAAKTADPQERARLYAEGQ
RLLNQDAPFLCLYQPKAQIAVGKNVQGYVFDPVIGVDLSKVRKS
>Mature_604_residues
MQRRLARLTPLVLEDHTSMGNRNEATRRRQTMAEQRAERWLNRAMQRRRFLRLTALGAGIAGLGLLTACARQEATPTPAP
AATPPGPAPAQTPAAAASPAPAGSGTFVIARLTDTITLDPSRQYELTSPIVMGACYERLVTIQPPDIRTVQFQLAEKVDI
SQDVTTYTFTLRAGPRFASGNPVTSADVVFSFNRLRELKDNPSWLADIIQTMETPDERTVRITLTEPNAAFLAMLVSPNF
SVLDSQVVKQQGGTDQPGADKTDKATEWLNQNSAGSGPFVLKGWVKEQEIVMERNPNYWGSPAPLERVIIRHIPDPTAQR
QLLERGDVDAAHNLDADLIAEVERAGTAQIVRGDTLDTEYFAMHTSPAVGKELADRRVRQAIAYAIDYDGIIQQLLRGAA
VRPPSVIPSGLLGVAEAEDARYRTDPERAKQLLAEAGLANGFELTLTFSSGGTEVGGVSSEVLASKIADDLRKVGIRVTL
DPRAPDVRLADYRAGKLQCTISGWTPDFLDPHGWAIPFGVPGEAAAKRVAYDNPQVADLFQRAAKTADPQERARLYAEGQ
RLLNQDAPFLCLYQPKAQIAVGKNVQGYVFDPVIGVDLSKVRKS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=497, Percent_Identity=30.5835010060362, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI1789966, Length=482, Percent_Identity=28.6307053941909, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI1787052, Length=505, Percent_Identity=24.1584158415842, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1789887, Length=463, Percent_Identity=26.9978401727862, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1787495, Length=452, Percent_Identity=21.9026548672566, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787551, Length=550, Percent_Identity=23.0909090909091, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1789397, Length=536, Percent_Identity=23.8805970149254, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=442, Percent_Identity=23.9819004524887, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65844; Mature: 65844

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRLARLTPLVLEDHTSMGNRNEATRRRQTMAEQRAERWLNRAMQRRRFLRLTALGAGI
CCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AGLGLLTACARQEATPTPAPAATPPGPAPAQTPAAAASPAPAGSGTFVIARLTDTITLDP
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
SRQYELTSPIVMGACYERLVTIQPPDIRTVQFQLAEKVDISQDVTTYTFTLRAGPRFASG
CCCEECCCCHHHHHHHHHEEECCCCCCEEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCC
NPVTSADVVFSFNRLRELKDNPSWLADIIQTMETPDERTVRITLTEPNAAFLAMLVSPNF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCH
SVLDSQVVKQQGGTDQPGADKTDKATEWLNQNSAGSGPFVLKGWVKEQEIVMERNPNYWG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHEECCCCCCC
SPAPLERVIIRHIPDPTAQRQLLERGDVDAAHNLDADLIAEVERAGTAQIVRGDTLDTEY
CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCEEEEECCCCCCCE
FAMHTSPAVGKELADRRVRQAIAYAIDYDGIIQQLLRGAAVRPPSVIPSGLLGVAEAEDA
EEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RYRTDPERAKQLLAEAGLANGFELTLTFSSGGTEVGGVSSEVLASKIADDLRKVGIRVTL
CCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
DPRAPDVRLADYRAGKLQCTISGWTPDFLDPHGWAIPFGVPGEAAAKRVAYDNPQVADLF
CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHCCCCCHHHHHH
QRAAKTADPQERARLYAEGQRLLNQDAPFLCLYQPKAQIAVGKNVQGYVFDPVIGVDLSK
HHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCEEECCCCCCCHHH
VRKS
HHCC
>Mature Secondary Structure
MQRRLARLTPLVLEDHTSMGNRNEATRRRQTMAEQRAERWLNRAMQRRRFLRLTALGAGI
CCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AGLGLLTACARQEATPTPAPAATPPGPAPAQTPAAAASPAPAGSGTFVIARLTDTITLDP
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC
SRQYELTSPIVMGACYERLVTIQPPDIRTVQFQLAEKVDISQDVTTYTFTLRAGPRFASG
CCCEECCCCHHHHHHHHHEEECCCCCCEEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCC
NPVTSADVVFSFNRLRELKDNPSWLADIIQTMETPDERTVRITLTEPNAAFLAMLVSPNF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCH
SVLDSQVVKQQGGTDQPGADKTDKATEWLNQNSAGSGPFVLKGWVKEQEIVMERNPNYWG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHEECCCCCCC
SPAPLERVIIRHIPDPTAQRQLLERGDVDAAHNLDADLIAEVERAGTAQIVRGDTLDTEY
CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCEEEEECCCCCCCE
FAMHTSPAVGKELADRRVRQAIAYAIDYDGIIQQLLRGAAVRPPSVIPSGLLGVAEAEDA
EEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RYRTDPERAKQLLAEAGLANGFELTLTFSSGGTEVGGVSSEVLASKIADDLRKVGIRVTL
CCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
DPRAPDVRLADYRAGKLQCTISGWTPDFLDPHGWAIPFGVPGEAAAKRVAYDNPQVADLF
CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHCCCCCHHHHHH
QRAAKTADPQERARLYAEGQRLLNQDAPFLCLYQPKAQIAVGKNVQGYVFDPVIGVDLSK
HHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCEEECCCCCCCHHH
VRKS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]